Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc15m22
         (648 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_0275 - 24084328-24084564,24084660-24084995                       29   2.4  
12_01_0301 - 2280215-2281154,2281271-2281338                           29   4.2  
12_01_0466 + 3649500-3649635,3649925-3650520                           28   7.4  
12_02_0707 - 22330267-22330872,22331154-22332870,22335417-22335634     27   9.7  
11_01_0059 - 444991-446908,447595-448218,448431-448861,450974-45...    27   9.7  

>04_04_0275 - 24084328-24084564,24084660-24084995
          Length = 190

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 25/81 (30%), Positives = 34/81 (41%), Gaps = 1/81 (1%)
 Frame = -2

Query: 608 HYEQNRAPLGLYFHAAWLKNNPEFLEAFLYWIDEI-LQSHNDVYFVTMTQVIQWVQNPRT 432
           HY+    P G+     W K+ P  L   +   DE   Q  + +Y+ T  Q     +  R 
Sbjct: 85  HYDPKACPYGVLLDVFWAKHRPTTL---IRQGDEAGTQYRSGIYYYTAEQ----ERVARE 137

Query: 431 VTEAKNFEPWREKCSVEGNPA 369
             EAK  E W+EK   E  PA
Sbjct: 138 SLEAKQ-EEWKEKIVTEILPA 157


>12_01_0301 - 2280215-2281154,2281271-2281338
          Length = 335

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 13/40 (32%), Positives = 24/40 (60%)
 Frame = -2

Query: 614 DRHYEQNRAPLGLYFHAAWLKNNPEFLEAFLYWIDEILQS 495
           D  +E N+A +G++FH     +N  F++AF +  +  LQ+
Sbjct: 167 DASWEHNKACIGIFFHLP-ATHNALFIKAFCHLTESPLQA 205


>12_01_0466 + 3649500-3649635,3649925-3650520
          Length = 243

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 14/36 (38%), Positives = 17/36 (47%)
 Frame = -1

Query: 351 LQAHFKGSSRRNHQFTNLFEMPSQLPLVKRPHGRWP 244
           LQ H +   +R    T LFE+  QL L   P G  P
Sbjct: 151 LQLHLRAEPKRGRPGTGLFELGLQLHLWAEPKGDRP 186


>12_02_0707 - 22330267-22330872,22331154-22332870,22335417-22335634
          Length = 846

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 12/35 (34%), Positives = 18/35 (51%)
 Frame = -2

Query: 560 WLKNNPEFLEAFLYWIDEILQSHNDVYFVTMTQVI 456
           WL+ + + LEAFLY I  +     D   V +  V+
Sbjct: 684 WLRVDSKLLEAFLYLITTVFDVSQDQDLVQLVDVV 718


>11_01_0059 - 444991-446908,447595-448218,448431-448861,450974-452293
          Length = 1430

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 16/62 (25%), Positives = 30/62 (48%)
 Frame = -1

Query: 333  GSSRRNHQFTNLFEMPSQLPLVKRPHGRWPLLRSHDLEPHVLY*LILIWCSSCSKYIIVG 154
            G  +  HQ  +   MP+   ++    G   + R+ +L  HVL  LIL+   +   Y+++ 
Sbjct: 1209 GLLQEAHQLVDDMPMPANAVILGALLGGCKIHRNTELAEHVLKQLILLEPWNSGNYVMLS 1268

Query: 153  NV 148
            N+
Sbjct: 1269 NI 1270


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,210,049
Number of Sequences: 37544
Number of extensions: 380545
Number of successful extensions: 961
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 933
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 961
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1608522592
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)