Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc15m21
         (622 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1281.06c |||acyl-coA desaturase |Schizosaccharomyces pombe|c...    80   3e-16
SPBC2G2.01c |liz1|SPBC4B4.13c|pantothenate transporter |Schizosa...    28   1.3  
SPBC2A9.06c |||di-trans,poly-cis-decaprenylcistransferase|Schizo...    27   2.2  
SPAC4G8.04 |||GTPase activating protein |Schizosaccharomyces pom...    27   2.9  
SPAC1952.02 |||ribosome biogenesis protein|Schizosaccharomyces p...    25   8.8  
SPBP8B7.30c |thi5||transcription factor Thi5|Schizosaccharomyces...    25   8.8  
SPBC9B6.09c |mdl1||mitochondrial peptide-transporting ATPase|Sch...    25   8.8  

>SPCC1281.06c |||acyl-coA desaturase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 479

 Score = 79.8 bits (188), Expect = 3e-16
 Identities = 43/137 (31%), Positives = 67/137 (48%)
 Frame = -3

Query: 614 FQKKYYLILMPIACFILPTVIPAYFWNESWINAFFVATLFRYTFILNVTWLVNSAAHKWG 435
           F  +++L +     FI P++     W + +   +F A + R  F+ + T+ VNS AH  G
Sbjct: 200 FNHRHFLPIASFMAFIFPSLFCGLLWGD-YRGGYFYAGVCRLVFVHHATFCVNSLAHLIG 258

Query: 434 GKPYDKNIKPSENISVSVFALGEGFHNYHHTFPWDYKTAELGNNRLNFTTNFINFFAKIG 255
            +P+D       +   ++  LGEG HNYHH FP DY+   L     + T  FI   +  G
Sbjct: 259 SQPFDDTNSARNHFITALVTLGEGNHNYHHAFPNDYRNG-LRWYEYDPTKIFIYIASLFG 317

Query: 254 WAYDLKTVSDEIIKNRV 204
            AY+L T  D  I+  +
Sbjct: 318 LAYNLNTFPDNEIQKGI 334


>SPBC2G2.01c |liz1|SPBC4B4.13c|pantothenate transporter
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 514

 Score = 27.9 bits (59), Expect = 1.3
 Identities = 13/27 (48%), Positives = 14/27 (51%)
 Frame = +1

Query: 340 NVWW*LWNPSPSANTDTEMFSDGLIFL 420
           N+W   W P    NTDT  F  GLI L
Sbjct: 400 NIWHIWWAPIMYPNTDTPRFIKGLIGL 426


>SPBC2A9.06c |||di-trans,
           poly-cis-decaprenylcistransferase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 258

 Score = 27.1 bits (57), Expect = 2.2
 Identities = 8/24 (33%), Positives = 16/24 (66%)
 Frame = -3

Query: 338 PWDYKTAELGNNRLNFTTNFINFF 267
           PW  +  E+ ++ + +TTN++ FF
Sbjct: 220 PWQLRLCEIFHDPILYTTNYLTFF 243


>SPAC4G8.04 |||GTPase activating protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 772

 Score = 26.6 bits (56), Expect = 2.9
 Identities = 13/27 (48%), Positives = 19/27 (70%)
 Frame = +3

Query: 192 TGAVHTVLYDLVRYSFQIVCPSNFSKE 272
           + A+++ L DLV+YSFQ   P +F KE
Sbjct: 718 SSAIYSFLSDLVQYSFQ---PDSFIKE 741


>SPAC1952.02 |||ribosome biogenesis protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 202

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 13/31 (41%), Positives = 17/31 (54%)
 Frame = +2

Query: 491 NGKESQRRTR*SKTHSKNTPESLLAK*SKRL 583
           +GKES +R +  K   K   +  L K SKRL
Sbjct: 134 SGKESSKREKSKKKKEKKEKKDKLKKKSKRL 164


>SPBP8B7.30c |thi5||transcription factor Thi5|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 857

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = +2

Query: 533 HSKNTPESLLAK*SKRLASELNSTFSGIE 619
           +S NTPESLL     ++  +L+S+   +E
Sbjct: 252 NSSNTPESLLIDYQSKIPEDLSSSLLPLE 280


>SPBC9B6.09c |mdl1||mitochondrial peptide-transporting
           ATPase|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 726

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 8/20 (40%), Positives = 15/20 (75%)
 Frame = -3

Query: 500 LFRYTFILNVTWLVNSAAHK 441
           +FR  +++ +TWL N+ A+K
Sbjct: 22  IFRANYLVPLTWLKNNVAYK 41


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,656,008
Number of Sequences: 5004
Number of extensions: 56162
Number of successful extensions: 168
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 163
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 168
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 273658928
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)