Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc15m21
         (622 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_03_0799 - 19805190-19805749,19806316-19806403                       29   3.0  
06_03_0968 - 26402154-26403834,26404322-26404383,26404473-264046...    29   3.9  
08_02_0296 - 15466693-15466878,15467046-15467315                       28   5.2  
08_02_0233 + 14593639-14594468,14594480-14594986,14595362-145958...    28   6.9  
11_04_0330 - 16446685-16446776,16446968-16447119,16447172-164472...    27   9.1  
07_03_0632 - 20112297-20116562                                         27   9.1  
03_02_0663 + 10256898-10258915,10259162-10259248,10259463-102597...    27   9.1  

>04_03_0799 - 19805190-19805749,19806316-19806403
          Length = 215

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 10/22 (45%), Positives = 12/22 (54%)
 Frame = +2

Query: 146 CPDLYRPSPRGSESHHRCGSHG 211
           CP   +P P+  E  H CG HG
Sbjct: 126 CPAPPKPKPKPCECTHHCGGHG 147


>06_03_0968 -
           26402154-26403834,26404322-26404383,26404473-26404682,
           26404776-26404860,26405461-26405618,26405745-26405868,
           26405955-26406123,26406202-26406287,26406379-26406467,
           26406564-26406735,26407820-26408193
          Length = 1069

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 13/27 (48%), Positives = 15/27 (55%)
 Frame = +3

Query: 501 SRNEERVNPRLIPKIRRNHCWQNEASD 581
           SRN E   P L P  R NHC ++ A D
Sbjct: 897 SRNGEGGTPFLSPSFRTNHCRESAAMD 923


>08_02_0296 - 15466693-15466878,15467046-15467315
          Length = 151

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = +3

Query: 528 RLIPKIRRNHCWQNEASDW 584
           +L  +IRRNHCW+  +  W
Sbjct: 78  QLARRIRRNHCWEELSLKW 96


>08_02_0233 +
           14593639-14594468,14594480-14594986,14595362-14595856,
           14596592-14596662,14597116-14597199,14597328-14597446,
           14598029-14598109,14598397-14598411
          Length = 733

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 14/41 (34%), Positives = 19/41 (46%)
 Frame = +1

Query: 346 WW*LWNPSPSANTDTEMFSDGLIFLS*GFPPHL*AAEFTSH 468
           W  LW  + + N DTE + D   +    FP H  +A F  H
Sbjct: 39  WRPLWRQAGTVNLDTEPYLDPAAYRGNNFPEHRRSA-FVDH 78


>11_04_0330 -
           16446685-16446776,16446968-16447119,16447172-16447281,
           16447518-16447619,16447705-16447854,16448195-16448350,
           16448552-16448713,16449549-16449638,16450152-16450271,
           16451323-16451418,16451502-16451638,16453400-16453622
          Length = 529

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = -3

Query: 545 YFWNESWINAFFVATLFRYTF 483
           Y W +SWINA   A  + Y F
Sbjct: 210 YVWGDSWINAKTQAECYHYLF 230


>07_03_0632 - 20112297-20116562
          Length = 1421

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = -3

Query: 575 CFILPTVIPAYFWNESWINAFFVA 504
           CF+ PTV  A++   SW+  F +A
Sbjct: 534 CFLQPTVWKAWYIMHSWVRDFAIA 557


>03_02_0663 +
           10256898-10258915,10259162-10259248,10259463-10259724,
           10259802-10260111,10260535-10260645,10260861-10261090
          Length = 1005

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 8/29 (27%), Positives = 18/29 (62%)
 Frame = -3

Query: 344 TFPWDYKTAELGNNRLNFTTNFINFFAKI 258
           T+P+ Y+ A++  +R  + + FIN +  +
Sbjct: 884 TYPYRYRAADVNESRHTYMSRFINIYMNV 912


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,834,283
Number of Sequences: 37544
Number of extensions: 359585
Number of successful extensions: 877
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 849
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 877
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1502076244
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)