Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc15m21
         (622 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF134821-1|AAD40236.1|  226|Apis mellifera hexamerin protein.          25   0.60 
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                24   1.0  
DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholi...    22   5.5  
DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholi...    22   5.5  
DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chlor...    21   7.3  
DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chlor...    21   7.3  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              21   9.7  
AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein...    21   9.7  
AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.            21   9.7  

>AF134821-1|AAD40236.1|  226|Apis mellifera hexamerin protein.
          Length = 226

 Score = 25.0 bits (52), Expect = 0.60
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = -3

Query: 572 FILPTVIPAYFWNESWINAFFVATLFRYT 486
           F++PT +PA      W +   VA  F+Y+
Sbjct: 190 FVVPTRVPATCCTTXWWSXXTVAXTFKYS 218


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 24.2 bits (50), Expect = 1.0
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = +2

Query: 149 PDLYRPSPRGSESHHRCGSH 208
           P  Y P  RGS  HH+ G+H
Sbjct: 323 PSQYHPH-RGSSPHHQHGNH 341


>DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 21.8 bits (44), Expect = 5.5
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = +2

Query: 551 ESLLAK*SKRLASELNSTFSGIE 619
           ESL  +  KRL +EL S+++ +E
Sbjct: 48  ESLCGRHEKRLLNELLSSYNTLE 70


>DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 21.8 bits (44), Expect = 5.5
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = +2

Query: 551 ESLLAK*SKRLASELNSTFSGIE 619
           ESL  +  KRL +EL S+++ +E
Sbjct: 48  ESLCGRHEKRLLNELLSSYNTLE 70


>DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 21.4 bits (43), Expect = 7.3
 Identities = 10/22 (45%), Positives = 12/22 (54%)
 Frame = -3

Query: 602 YYLILMPIACFILPTVIPAYFW 537
           YYLI + I C +L  V    FW
Sbjct: 243 YYLIQIYIPCCMLVIVSWVSFW 264


>DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 21.4 bits (43), Expect = 7.3
 Identities = 10/22 (45%), Positives = 12/22 (54%)
 Frame = -3

Query: 602 YYLILMPIACFILPTVIPAYFW 537
           YYLI + I C +L  V    FW
Sbjct: 243 YYLIQIYIPCCMLVIVSWVSFW 264


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.0 bits (42), Expect = 9.7
 Identities = 6/11 (54%), Positives = 8/11 (72%)
 Frame = -2

Query: 375  TRRGIPQLPPH 343
            T  G+P+ PPH
Sbjct: 1076 TAEGVPEQPPH 1086


>AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein
           protein.
          Length = 411

 Score = 21.0 bits (42), Expect = 9.7
 Identities = 7/18 (38%), Positives = 11/18 (61%)
 Frame = -1

Query: 61  RINRSYGYLDLNYTDYNV 8
           RI  ++ Y D  Y +YN+
Sbjct: 211 RITHNFFYFDPRYGNYNI 228


>AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.
          Length = 493

 Score = 21.0 bits (42), Expect = 9.7
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = -3

Query: 311 GNNRLNFTTNFINFFAKIGWAYDLK 237
           G+N++ F+     F A  G  YDLK
Sbjct: 409 GSNQIAFSRGCSGFVAFNGDQYDLK 433


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 177,631
Number of Sequences: 438
Number of extensions: 4122
Number of successful extensions: 10
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18460203
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)