Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc15m16
         (473 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF222296-1|ABN79656.2|  403|Tribolium castaneum arginine vasopre...    25   0.47 
AJ606487-1|CAE55183.1|  203|Tribolium castaneum Giant protein pr...    23   1.4  
DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.          21   5.8  

>EF222296-1|ABN79656.2|  403|Tribolium castaneum arginine
           vasopressin receptor protein.
          Length = 403

 Score = 24.6 bits (51), Expect = 0.47
 Identities = 13/40 (32%), Positives = 19/40 (47%)
 Frame = +2

Query: 146 PWLPLMTSRLMPRRFLYAVRSYFGNHLSGSGGLERSAFGG 265
           PW+ L  +R +PR  L    +   N+ S +GG   S   G
Sbjct: 316 PWIYLAFNRELPRLLLRHYTASSKNYRSATGGNSASNSSG 355


>AJ606487-1|CAE55183.1|  203|Tribolium castaneum Giant protein
           protein.
          Length = 203

 Score = 23.0 bits (47), Expect = 1.4
 Identities = 17/59 (28%), Positives = 27/59 (45%)
 Frame = -1

Query: 452 NSCRPWTSLRRKXILTPWNRRNG*WELKSSRRLFKASRNNLPELPXLSWDRRRKRNASA 276
           +S   +   R K +       NG    K+ RRL   ++N   + P   W++RRK N +A
Sbjct: 95  DSSEAFNEFRTKILAQVHGTNNG--TNKNMRRLSTTTQNKNDD-PSY-WEKRRKNNEAA 149


>DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.
          Length = 822

 Score = 21.0 bits (42), Expect = 5.8
 Identities = 6/10 (60%), Positives = 9/10 (90%)
 Frame = +2

Query: 146 PWLPLMTSRL 175
           PW+PL+ +RL
Sbjct: 547 PWIPLLDTRL 556


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 91,308
Number of Sequences: 336
Number of extensions: 1736
Number of successful extensions: 6
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 52
effective length of database: 105,113
effective search space used: 11036865
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)