Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc15m16
         (473 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC320.10 |srp72||signal recognition particle subunit Srp72|Sch...    29   0.27 
SPAC24C9.03 |mvd1||diphosphomevalonate decarboxylase |Schizosacc...    27   1.5  
SPBC25H2.09 |||DUF1690 family protein|Schizosaccharomyces pombe|...    26   2.5  
SPBC839.03c |||neddylation protein Dcn1|Schizosaccharomyces pomb...    25   5.9  
SPAC926.06c |||leucine-rich repeat protein, unknown|Schizosaccha...    25   7.8  

>SPCC320.10 |srp72||signal recognition particle subunit
           Srp72|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 561

 Score = 29.5 bits (63), Expect = 0.27
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = -3

Query: 264 PPNADLSKPPDPERWLPKYERT 199
           P + +    PDP+RW+PK +RT
Sbjct: 524 PKSFNPKATPDPQRWIPKRDRT 545


>SPAC24C9.03 |mvd1||diphosphomevalonate decarboxylase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 393

 Score = 27.1 bits (57), Expect = 1.5
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = +2

Query: 140 DIPWLPLMTSRLMPRRFLYAVRSYFGNHLSGSGG 241
           D+PW P   SR+  +    A RS FG +++   G
Sbjct: 140 DLPWTPTQLSRIARQGSGSACRSLFGGYVAWEMG 173


>SPBC25H2.09 |||DUF1690 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 162

 Score = 26.2 bits (55), Expect = 2.5
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = -3

Query: 432 QLETKXDIDALESSKWMMGAKVVK 361
           QL  K  IDA++  +W   AK +K
Sbjct: 56  QLRQKKAIDAIQEEEWKSNAKTIK 79


>SPBC839.03c |||neddylation protein Dcn1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 251

 Score = 25.0 bits (52), Expect = 5.9
 Identities = 13/38 (34%), Positives = 19/38 (50%)
 Frame = -3

Query: 234 DPERWLPKYERTAYRKRRGIRRDVIKGSQGMSTTATDQ 121
           DPE  L  Y   + R     R   ++G+  +STT+ DQ
Sbjct: 88  DPETLLVSYFLKSPRMGEFHRESFVEGALNLSTTSLDQ 125


>SPAC926.06c |||leucine-rich repeat protein,
           unknown|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 621

 Score = 24.6 bits (51), Expect = 7.8
 Identities = 22/92 (23%), Positives = 37/92 (40%)
 Frame = -1

Query: 410 LTPWNRRNG*WELKSSRRLFKASRNNLPELPXLSWDRRRKRNASATANSRRTQTSPNLPI 231
           L P N+++    +KSS  L KAS+  + +L           +A  + N+    TS N+ +
Sbjct: 514 LNPVNQKSHSPAIKSSSTLRKASKTRIVDL-------SAPNSAVFSKNASGGDTSSNVSL 566

Query: 230 RKGGCQSTSELRTESDEALDVTSSRVAKECPP 135
             G         TES +        + +E  P
Sbjct: 567 LNGSASEEIPQNTESGQVFRKKIEMLRQEAGP 598


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,552,815
Number of Sequences: 5004
Number of extensions: 25907
Number of successful extensions: 81
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 78
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 81
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 182448900
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)