Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc15m16
(473 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_1613 + 38643833-38643974,38644054-38644190,38644828-386452... 50 1e-06
03_06_0212 + 32400982-32402055 31 0.36
09_04_0078 + 14379720-14379786,14379903-14379974,14381093-143814... 29 1.4
02_05_0101 - 25824093-25824112,25824734-25824842,25824927-258264... 29 1.9
04_04_0612 + 26611743-26611878,26612211-26612340,26613243-26613798 28 3.3
03_02_0502 - 8934646-8934834,8934974-8935121,8935228-8935304,893... 28 4.4
02_03_0321 - 17683766-17683834,17685085-17685150,17685568-176856... 27 5.8
02_01_0297 + 1986422-1986570,1986960-1987065,1987188-1987464,198... 27 5.8
06_03_0783 - 24546403-24546765,24547202-24547262,24547899-245480... 27 7.7
04_03_0282 - 13874547-13874738,13875047-13875134,13875222-138753... 27 7.7
>01_06_1613 +
38643833-38643974,38644054-38644190,38644828-38645207,
38645487-38645583,38645685-38645972,38646683-38647648
Length = 669
Score = 50.0 bits (114), Expect = 1e-06
Identities = 20/37 (54%), Positives = 28/37 (75%)
Frame = -3
Query: 255 ADLSKPPDPERWLPKYERTAYRKRRGIRRDVIKGSQG 145
A+ PPDPERWLPK ER++YR +R +R ++G+QG
Sbjct: 589 ANPGPPPDPERWLPKRERSSYRPKRKDKRAQVRGAQG 625
>03_06_0212 + 32400982-32402055
Length = 357
Score = 31.5 bits (68), Expect = 0.36
Identities = 19/60 (31%), Positives = 26/60 (43%)
Frame = -1
Query: 338 NNLPELPXLSWDRRRKRNASATANSRRTQTSPNLPIRKGGCQSTSELRTESDEALDVTSS 159
+ LP L ++ A A RR+Q K GC STSE SD+ + V S+
Sbjct: 108 DTLPSLDPAAFAAIPHAAADAAPTRRRSQQQQQQLSNKSGCSSTSETSKGSDKEVTVASA 167
>09_04_0078 +
14379720-14379786,14379903-14379974,14381093-14381497,
14382835-14382911,14383016-14383135,14383227-14383997,
14384933-14385146,14385269-14385735
Length = 730
Score = 29.5 bits (63), Expect = 1.4
Identities = 19/64 (29%), Positives = 33/64 (51%), Gaps = 2/64 (3%)
Frame = -1
Query: 314 LSWDRRRKRNASATANSR-RTQTSPNLPIR-KGGCQSTSELRTESDEALDVTSSRVAKEC 141
+ WD RR++ AS N+R R + N P R +GG ++ S++ ++ + T V E
Sbjct: 37 MGWDNRRRKQASTIMNARGRGARNGNGPNRGRGGGRAHSDVVVGANTTVLATRRWVGLEI 96
Query: 140 PPLP 129
+P
Sbjct: 97 DSVP 100
>02_05_0101 -
25824093-25824112,25824734-25824842,25824927-25826429,
25826596-25827333,25827712-25827919,25828455-25830409,
25830868-25830960,25831044-25831100,25831189-25831272,
25831345-25831437,25831622-25832053,25833593-25833933,
25834663-25835215
Length = 2061
Score = 29.1 bits (62), Expect = 1.9
Identities = 18/62 (29%), Positives = 21/62 (33%)
Frame = -1
Query: 311 SWDRRRKRNASATANSRRTQTSPNLPIRKGGCQSTSELRTESDEALDVTSSRVAKECPPL 132
SW RRR R SRR + GGC + R E V V P+
Sbjct: 126 SWRRRRSRTRQRRRRSRRRRRRRRTCGGGGGCGRGGDARGRPTELAKVVDGAVTPSLVPV 185
Query: 131 PR 126
R
Sbjct: 186 DR 187
>04_04_0612 + 26611743-26611878,26612211-26612340,26613243-26613798
Length = 273
Score = 28.3 bits (60), Expect = 3.3
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = -2
Query: 94 AYPGDLCQESPGRSQADRERLAAQATAEEE 5
A P D+ SP RS+ +ER+AA A E
Sbjct: 128 AEPADVVTGSPNRSETGQERVAADRPASSE 157
>03_02_0502 -
8934646-8934834,8934974-8935121,8935228-8935304,
8935427-8935497,8935594-8935680,8935852-8936316,
8936406-8936880
Length = 503
Score = 27.9 bits (59), Expect = 4.4
Identities = 11/36 (30%), Positives = 21/36 (58%)
Frame = -3
Query: 240 PPDPERWLPKYERTAYRKRRGIRRDVIKGSQGMSTT 133
PP P +++P E +A+ K + DV+ ++ + TT
Sbjct: 25 PPTPPQYVPPEEPSAFAKLYAVAGDVVGRAKALLTT 60
>02_03_0321 -
17683766-17683834,17685085-17685150,17685568-17685633,
17685827-17685897,17688035-17688053,17688405-17688687,
17688775-17688945,17689060-17689431,17689629-17689669,
17690112-17690365,17691185-17691263,17691390-17691950
Length = 683
Score = 27.5 bits (58), Expect = 5.8
Identities = 6/14 (42%), Positives = 10/14 (71%)
Frame = +3
Query: 117 HIDPWQWWTFLGYP 158
H+ W+WW ++ YP
Sbjct: 182 HLPTWKWWQYVDYP 195
>02_01_0297 +
1986422-1986570,1986960-1987065,1987188-1987464,
1987805-1988305,1989010-1990016,1990131-1990781,
1991337-1991633,1991735-1992013,1993070-1993198,
1993291-1993491,1993651-1993793,1993878-1994190,
1994349-1994488,1995320-1995398,1995484-1995753,
1996208-1996425,1996521-1996632
Length = 1623
Score = 27.5 bits (58), Expect = 5.8
Identities = 16/62 (25%), Positives = 32/62 (51%), Gaps = 1/62 (1%)
Frame = -1
Query: 296 RKRNASATANSRRTQTSPNL-PIRKGGCQSTSELRTESDEALDVTSSRVAKECPPLPRIN 120
R A +N +T + PI K ++ E++ E++++ D+T S+ K P + ++
Sbjct: 817 RHNVAPGGSNEIKTHVKQEIMPIDKETSETAPEVKNEANDSTDITVSKSGK--PKIKGVS 874
Query: 119 MT 114
MT
Sbjct: 875 MT 876
>06_03_0783 - 24546403-24546765,24547202-24547262,24547899-24548004,
24548118-24551600,24553134-24553179
Length = 1352
Score = 27.1 bits (57), Expect = 7.7
Identities = 10/31 (32%), Positives = 18/31 (58%)
Frame = -1
Query: 308 WDRRRKRNASATANSRRTQTSPNLPIRKGGC 216
WD++R R+ A +S ++ +P R+ GC
Sbjct: 1289 WDKKRGRDPGAQWHSSQSNRIVRIPGRRSGC 1319
>04_03_0282 -
13874547-13874738,13875047-13875134,13875222-13875328,
13875487-13875542,13875853-13875882,13877397-13877505,
13877774-13878318,13879584-13879668,13879753-13879914,
13880293-13880434,13880524-13880624,13882307-13882489
Length = 599
Score = 27.1 bits (57), Expect = 7.7
Identities = 15/50 (30%), Positives = 23/50 (46%)
Frame = -1
Query: 293 KRNASATANSRRTQTSPNLPIRKGGCQSTSELRTESDEALDVTSSRVAKE 144
+RN + R ++SPNLP R QS +E +E ++ S E
Sbjct: 358 ERNQLQVRDVIRQKSSPNLPARSVPLQSQNEFISEVKSSVTAVSESACHE 407
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,842,593
Number of Sequences: 37544
Number of extensions: 227613
Number of successful extensions: 699
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 674
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 699
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 967140324
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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