Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc15m16
         (473 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ439060-1|CAD27752.1|  763|Anopheles gambiae hypothetical prote...    26   0.77 
AJ438610-9|CAD27481.1|  763|Anopheles gambiae hypothetical prote...    26   0.77 
X98186-1|CAA66861.1|  269|Anopheles gambiae put. S3a ribosomal p...    25   1.8  
AY536865-1|AAT07965.1|  650|Anopheles gambiae tryptophan transpo...    23   5.4  
AJ626713-1|CAF25029.1|  650|Anopheles gambiae tryptophan transpo...    23   5.4  
AJ439060-18|CAD27769.1|  257|Anopheles gambiae hypothetical prot...    23   5.4  
AJ271193-1|CAB66001.1| 1623|Anopheles gambiae laminin gamma 1 pr...    23   7.2  
AF513634-1|AAM53606.1|  216|Anopheles gambiae glutathione S-tran...    22   9.5  
AF042732-2|AAC18057.1|  179|Anopheles gambiae TU37B2 protein.          22   9.5  

>AJ439060-1|CAD27752.1|  763|Anopheles gambiae hypothetical protein
           protein.
          Length = 763

 Score = 25.8 bits (54), Expect = 0.77
 Identities = 11/15 (73%), Positives = 12/15 (80%)
 Frame = -1

Query: 53  SSRPRALGSASNSRR 9
           S  PRA GS+SNSRR
Sbjct: 66  SGEPRAAGSSSNSRR 80


>AJ438610-9|CAD27481.1|  763|Anopheles gambiae hypothetical protein
           protein.
          Length = 763

 Score = 25.8 bits (54), Expect = 0.77
 Identities = 11/15 (73%), Positives = 12/15 (80%)
 Frame = -1

Query: 53  SSRPRALGSASNSRR 9
           S  PRA GS+SNSRR
Sbjct: 66  SGEPRAAGSSSNSRR 80


>X98186-1|CAA66861.1|  269|Anopheles gambiae put. S3a ribosomal
           protein homologue protein.
          Length = 269

 Score = 24.6 bits (51), Expect = 1.8
 Identities = 18/45 (40%), Positives = 23/45 (51%)
 Frame = -3

Query: 255 ADLSKPPDPERWLPKYERTAYRKRRGIRRDVIKGSQGMSTTATDQ 121
           ADL   PD ER   K++  A     G  RDV+    GM+ T TD+
Sbjct: 72  ADLQNEPDAERSFRKFKLVA-ESVNG--RDVLTNFHGMALT-TDK 112


>AY536865-1|AAT07965.1|  650|Anopheles gambiae tryptophan
           transporter protein.
          Length = 650

 Score = 23.0 bits (47), Expect = 5.4
 Identities = 11/25 (44%), Positives = 13/25 (52%)
 Frame = -3

Query: 240 PPDPERWLPKYERTAYRKRRGIRRD 166
           P DPE    KY  T YR  + + RD
Sbjct: 614 PEDPEL-NAKYHETVYRHEQSLPRD 637


>AJ626713-1|CAF25029.1|  650|Anopheles gambiae tryptophan
           transporter protein.
          Length = 650

 Score = 23.0 bits (47), Expect = 5.4
 Identities = 11/25 (44%), Positives = 13/25 (52%)
 Frame = -3

Query: 240 PPDPERWLPKYERTAYRKRRGIRRD 166
           P DPE    KY  T YR  + + RD
Sbjct: 614 PEDPEL-NAKYHETVYRHEQSLPRD 637


>AJ439060-18|CAD27769.1|  257|Anopheles gambiae hypothetical protein
           protein.
          Length = 257

 Score = 23.0 bits (47), Expect = 5.4
 Identities = 9/30 (30%), Positives = 17/30 (56%)
 Frame = -1

Query: 344 SRNNLPELPXLSWDRRRKRNASATANSRRT 255
           S+N +P +P     +RR+R++S      R+
Sbjct: 60  SKNRMPPVPPPKHSQRRRRSSSPRTRQFRS 89


>AJ271193-1|CAB66001.1| 1623|Anopheles gambiae laminin gamma 1
           precursor protein.
          Length = 1623

 Score = 22.6 bits (46), Expect = 7.2
 Identities = 9/26 (34%), Positives = 15/26 (57%)
 Frame = -3

Query: 267 LPPNADLSKPPDPERWLPKYERTAYR 190
           LPP   +     P+R +P++E  AY+
Sbjct: 35  LPPLECVDPYGRPQRCIPEFENAAYQ 60


>AF513634-1|AAM53606.1|  216|Anopheles gambiae glutathione
           S-transferase D5 protein.
          Length = 216

 Score = 22.2 bits (45), Expect = 9.5
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = -1

Query: 215 QSTSELRTESDEALDVTSSRVAKEC 141
           Q ++ELR + ++ALD+T   V  EC
Sbjct: 120 QPSAELRGKLEQALDLTEKFVT-EC 143


>AF042732-2|AAC18057.1|  179|Anopheles gambiae TU37B2 protein.
          Length = 179

 Score = 22.2 bits (45), Expect = 9.5
 Identities = 8/11 (72%), Positives = 9/11 (81%)
 Frame = +1

Query: 436 QGRQLFGXAPG 468
           QGR+LFG  PG
Sbjct: 166 QGRRLFGPTPG 176


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 404,762
Number of Sequences: 2352
Number of extensions: 7045
Number of successful extensions: 21
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21
length of database: 563,979
effective HSP length: 59
effective length of database: 425,211
effective search space used: 41670678
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)