Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc15m16
(473 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BX537991-1|CAD97950.1| 626|Homo sapiens hypothetical protein pr... 63 4e-10
AF077019-1|AAC27324.1| 671|Homo sapiens signal recognition part... 63 4e-10
AF069765-1|AAC97490.1| 671|Homo sapiens signal recognition part... 63 4e-10
AF038851-1|AAQ13423.1| 671|Homo sapiens putative signal recogni... 63 4e-10
AF129756-17|AAD18086.1| 2157|Homo sapiens BAT2 protein. 31 2.7
BC044311-1|AAH44311.2| 399|Homo sapiens hypothetical protein LO... 30 3.6
AL512408-3|CAI23484.1| 2285|Homo sapiens AT rich interactive dom... 30 3.6
AL512408-1|CAI23482.1| 1685|Homo sapiens AT rich interactive dom... 30 3.6
AL034380-9|CAI21623.1| 2285|Homo sapiens AT rich interactive dom... 30 3.6
AL034380-6|CAI21621.1| 1685|Homo sapiens AT rich interactive dom... 30 3.6
AK223275-1|BAD96995.1| 1181|Homo sapiens AT rich interactive dom... 30 3.6
AK074940-1|BAC11306.1| 754|Homo sapiens protein ( Homo sapiens ... 30 3.6
AK055141-1|BAB70862.1| 260|Homo sapiens protein ( Homo sapiens ... 30 3.6
AK027655-1|BAB55270.1| 613|Homo sapiens protein ( Homo sapiens ... 30 3.6
AK027442-1|BAB55114.1| 527|Homo sapiens protein ( Homo sapiens ... 30 3.6
AF521670-1|AAN03446.1| 1999|Homo sapiens SWI/SNF chromatin remod... 30 3.6
AF268913-1|AAK54505.1| 1685|Homo sapiens OSA1 nuclear protein pr... 30 3.6
AF265208-1|AAF75765.1| 1927|Homo sapiens SWI-SNF complex protein... 30 3.6
AF231056-1|AAG33967.1| 2285|Homo sapiens BRG1-Associated Factor ... 30 3.6
AF219114-1|AAG17549.2| 1939|Homo sapiens chromatin remodelling f... 30 3.6
M33518-1|AAA35586.1| 2142|Homo sapiens protein ( Human HLA-B-ass... 30 4.7
M33509-1|AAA35585.1| 2142|Homo sapiens protein ( Human HLA-B-ass... 30 4.7
BX511262-1|CAI95572.1| 2157|Homo sapiens HLA-B associated transc... 30 4.7
BC060668-1|AAH60668.1| 2157|Homo sapiens HLA-B associated transc... 30 4.7
BC042295-1|AAH42295.1| 2157|Homo sapiens BAT2 protein protein. 30 4.7
BC030127-1|AAH30127.1| 696|Homo sapiens Similar to HLA-B associ... 30 4.7
BA000025-31|BAB63391.1| 2157|Homo sapiens BAT2 protein. 30 4.7
AL805934-4|CAI18500.1| 2157|Homo sapiens HLA-B associated transc... 30 4.7
AL662847-63|CAI17698.2| 2157|Homo sapiens HLA-B associated trans... 30 4.7
AL662801-47|CAI18313.1| 2157|Homo sapiens HLA-B associated trans... 30 4.7
AB210034-1|BAE06116.1| 1537|Homo sapiens C6orf21 variant protein... 30 4.7
AK126510-1|BAC86575.1| 213|Homo sapiens protein ( Homo sapiens ... 29 6.2
AB209421-1|BAD92658.1| 446|Homo sapiens amiloride-sensitive cat... 29 8.2
>BX537991-1|CAD97950.1| 626|Homo sapiens hypothetical protein
protein.
Length = 626
Score = 63.3 bits (147), Expect = 4e-10
Identities = 43/122 (35%), Positives = 64/122 (52%), Gaps = 3/122 (2%)
Frame = -3
Query: 471 RAXSXAEQLPPLDQLETKXDIDALESSKWMMGAKVV-KKTVQSKQEQSPGTPGFELGQXX 295
+A + ++ LP D + K D++ALE+S GA + KK + + P G G
Sbjct: 443 KAKALSKHLPSSDSMSLKVDVEALENSA---GATYIRKKGGKVTGDSQPKEQG--QGDLK 497
Query: 294 XXXXXXXXKLPPNADLSKPPDPERWLPKYERTAYR-KRRGIRRDVI-KGSQGMSTTATDQ 121
KLP N D PDPERWLP ER+ YR +++G ++D I KG+QG + A+ +
Sbjct: 498 KKKKKKKGKLPKNYDPKVTPDPERWLPMRERSYYRGRKKGKKKDQIGKGTQGATAGASSE 557
Query: 120 YD 115
D
Sbjct: 558 LD 559
>AF077019-1|AAC27324.1| 671|Homo sapiens signal recognition
particle 72 protein.
Length = 671
Score = 63.3 bits (147), Expect = 4e-10
Identities = 43/122 (35%), Positives = 64/122 (52%), Gaps = 3/122 (2%)
Frame = -3
Query: 471 RAXSXAEQLPPLDQLETKXDIDALESSKWMMGAKVV-KKTVQSKQEQSPGTPGFELGQXX 295
+A + ++ LP D + K D++ALE+S GA + KK + + P G G
Sbjct: 498 KAKALSKHLPSSDSMSLKVDVEALENSA---GATYIRKKGGKVTGDSQPKEQG--QGDLK 552
Query: 294 XXXXXXXXKLPPNADLSKPPDPERWLPKYERTAYR-KRRGIRRDVI-KGSQGMSTTATDQ 121
KLP N D PDPERWLP ER+ YR +++G ++D I KG+QG + A+ +
Sbjct: 553 KKKKKKKGKLPKNYDPKVTPDPERWLPMRERSYYRGRKKGKKKDQIGKGTQGATAGASSE 612
Query: 120 YD 115
D
Sbjct: 613 LD 614
>AF069765-1|AAC97490.1| 671|Homo sapiens signal recognition
particle 72 protein.
Length = 671
Score = 63.3 bits (147), Expect = 4e-10
Identities = 43/122 (35%), Positives = 64/122 (52%), Gaps = 3/122 (2%)
Frame = -3
Query: 471 RAXSXAEQLPPLDQLETKXDIDALESSKWMMGAKVV-KKTVQSKQEQSPGTPGFELGQXX 295
+A + ++ LP D + K D++ALE+S GA + KK + + P G G
Sbjct: 498 KAKALSKHLPSSDSMSLKVDVEALENSA---GATYIRKKGGKVTGDSQPKEQG--QGDLK 552
Query: 294 XXXXXXXXKLPPNADLSKPPDPERWLPKYERTAYR-KRRGIRRDVI-KGSQGMSTTATDQ 121
KLP N D PDPERWLP ER+ YR +++G ++D I KG+QG + A+ +
Sbjct: 553 KKKKKKKGKLPKNYDPKVTPDPERWLPMRERSYYRGRKKGKKKDQIGKGTQGATAGASSE 612
Query: 120 YD 115
D
Sbjct: 613 LD 614
>AF038851-1|AAQ13423.1| 671|Homo sapiens putative signal
recognition particle protein.
Length = 671
Score = 63.3 bits (147), Expect = 4e-10
Identities = 43/122 (35%), Positives = 64/122 (52%), Gaps = 3/122 (2%)
Frame = -3
Query: 471 RAXSXAEQLPPLDQLETKXDIDALESSKWMMGAKVV-KKTVQSKQEQSPGTPGFELGQXX 295
+A + ++ LP D + K D++ALE+S GA + KK + + P G G
Sbjct: 498 KAKALSKHLPSSDSMSLKVDVEALENSA---GATYIRKKGGKVTGDSQPKEQG--QGDLK 552
Query: 294 XXXXXXXXKLPPNADLSKPPDPERWLPKYERTAYR-KRRGIRRDVI-KGSQGMSTTATDQ 121
KLP N D PDPERWLP ER+ YR +++G ++D I KG+QG + A+ +
Sbjct: 553 KKKKKKKGKLPKNYDPKVTPDPERWLPMRERSYYRGRKKGKKKDQIGKGTQGATAGASSE 612
Query: 120 YD 115
D
Sbjct: 613 VD 614
>AF129756-17|AAD18086.1| 2157|Homo sapiens BAT2 protein.
Length = 2157
Score = 30.7 bits (66), Expect = 2.7
Identities = 17/36 (47%), Positives = 21/36 (58%), Gaps = 2/36 (5%)
Frame = -3
Query: 246 SKPPDPERWLPK-YERTAYRKRRG-IRRDVIKGSQG 145
+ PPD RW+PK +ERT R G RR GS+G
Sbjct: 2112 ASPPDALRWIPKPWERTGLPPREGPSRRAEEPGSRG 2147
>BC044311-1|AAH44311.2| 399|Homo sapiens hypothetical protein
LOC339344 protein.
Length = 399
Score = 30.3 bits (65), Expect = 3.6
Identities = 23/72 (31%), Positives = 33/72 (45%), Gaps = 7/72 (9%)
Frame = -1
Query: 329 PELPXLSWDRRRKRNASATANSRRTQTS------PNLPIRKGGCQSTSELRTESDEALD- 171
P+ LS DRR R A +A+S+ +S P+ ++GGC E + AL
Sbjct: 151 PQRYVLSEDRREDRRADTSAHSKAGSSSPEPWARPSCTPQEGGCPRPKERESPPPSALQP 210
Query: 170 VTSSRVAKECPP 135
V R+A PP
Sbjct: 211 VQLPRLALSPPP 222
>AL512408-3|CAI23484.1| 2285|Homo sapiens AT rich interactive domain
1A (SWI-like) protein.
Length = 2285
Score = 30.3 bits (65), Expect = 3.6
Identities = 13/39 (33%), Positives = 21/39 (53%)
Frame = -1
Query: 230 RKGGCQSTSELRTESDEALDVTSSRVAKECPPLPRINMT 114
R GG +T ++T + ++ SR CPP PR ++T
Sbjct: 1845 RIGGGDTTEHIQTHFESKTELLPSRPHAPCPPAPRKHVT 1883
>AL512408-1|CAI23482.1| 1685|Homo sapiens AT rich interactive domain
1A (SWI-like) protein.
Length = 1685
Score = 30.3 bits (65), Expect = 3.6
Identities = 13/39 (33%), Positives = 21/39 (53%)
Frame = -1
Query: 230 RKGGCQSTSELRTESDEALDVTSSRVAKECPPLPRINMT 114
R GG +T ++T + ++ SR CPP PR ++T
Sbjct: 1245 RIGGGDTTEHIQTHFESKTELLPSRPHAPCPPAPRKHVT 1283
>AL034380-9|CAI21623.1| 2285|Homo sapiens AT rich interactive domain
1A (SWI-like) protein.
Length = 2285
Score = 30.3 bits (65), Expect = 3.6
Identities = 13/39 (33%), Positives = 21/39 (53%)
Frame = -1
Query: 230 RKGGCQSTSELRTESDEALDVTSSRVAKECPPLPRINMT 114
R GG +T ++T + ++ SR CPP PR ++T
Sbjct: 1845 RIGGGDTTEHIQTHFESKTELLPSRPHAPCPPAPRKHVT 1883
>AL034380-6|CAI21621.1| 1685|Homo sapiens AT rich interactive domain
1A (SWI-like) protein.
Length = 1685
Score = 30.3 bits (65), Expect = 3.6
Identities = 13/39 (33%), Positives = 21/39 (53%)
Frame = -1
Query: 230 RKGGCQSTSELRTESDEALDVTSSRVAKECPPLPRINMT 114
R GG +T ++T + ++ SR CPP PR ++T
Sbjct: 1245 RIGGGDTTEHIQTHFESKTELLPSRPHAPCPPAPRKHVT 1283
>AK223275-1|BAD96995.1| 1181|Homo sapiens AT rich interactive domain
1A (SWI- like) isoform a variant protein.
Length = 1181
Score = 30.3 bits (65), Expect = 3.6
Identities = 13/39 (33%), Positives = 21/39 (53%)
Frame = -1
Query: 230 RKGGCQSTSELRTESDEALDVTSSRVAKECPPLPRINMT 114
R GG +T ++T + ++ SR CPP PR ++T
Sbjct: 741 RIGGGDTTEHIQTHFESKTELLPSRPHAPCPPAPRKHVT 779
>AK074940-1|BAC11306.1| 754|Homo sapiens protein ( Homo sapiens
cDNA FLJ90459 fis, clone NT2RP3001754. ).
Length = 754
Score = 30.3 bits (65), Expect = 3.6
Identities = 13/39 (33%), Positives = 21/39 (53%)
Frame = -1
Query: 230 RKGGCQSTSELRTESDEALDVTSSRVAKECPPLPRINMT 114
R GG +T ++T + ++ SR CPP PR ++T
Sbjct: 314 RIGGGDTTEHIQTHFESKTELLPSRPHAPCPPAPRKHVT 352
>AK055141-1|BAB70862.1| 260|Homo sapiens protein ( Homo sapiens
cDNA FLJ30579 fis, clone BRAWH2006989, weakly similar to
DNA-DIRECTED RNA POLYMERASE II LARGEST SUBUNIT (EC
2.7.7.6). ).
Length = 260
Score = 30.3 bits (65), Expect = 3.6
Identities = 10/24 (41%), Positives = 13/24 (54%)
Frame = +3
Query: 69 SWQRSPG*AWSAVYSCHIDPWQWW 140
SW SP +++S H PW WW
Sbjct: 174 SWSHSPHSRSHSLWSSHSSPWFWW 197
>AK027655-1|BAB55270.1| 613|Homo sapiens protein ( Homo sapiens
cDNA FLJ14749 fis, clone NT2RP3002876, weakly similar to
Drosophila melanogaster eyelid (eld) mRNA. ).
Length = 613
Score = 30.3 bits (65), Expect = 3.6
Identities = 13/39 (33%), Positives = 21/39 (53%)
Frame = -1
Query: 230 RKGGCQSTSELRTESDEALDVTSSRVAKECPPLPRINMT 114
R GG +T ++T + ++ SR CPP PR ++T
Sbjct: 173 RIGGGDTTEHIQTHFESKTELLPSRPHAPCPPAPRKHVT 211
>AK027442-1|BAB55114.1| 527|Homo sapiens protein ( Homo sapiens
cDNA FLJ14536 fis, clone NT2RM2001105, weakly similar to
Drosophila melanogaster eyelid (eld) mRNA. ).
Length = 527
Score = 30.3 bits (65), Expect = 3.6
Identities = 13/39 (33%), Positives = 21/39 (53%)
Frame = -1
Query: 230 RKGGCQSTSELRTESDEALDVTSSRVAKECPPLPRINMT 114
R GG +T ++T + ++ SR CPP PR ++T
Sbjct: 87 RIGGGDTTEHIQTHFESKTELLPSRPHAPCPPAPRKHVT 125
>AF521670-1|AAN03446.1| 1999|Homo sapiens SWI/SNF chromatin remodeling
complex subunit OSA1 protein.
Length = 1999
Score = 30.3 bits (65), Expect = 3.6
Identities = 13/39 (33%), Positives = 21/39 (53%)
Frame = -1
Query: 230 RKGGCQSTSELRTESDEALDVTSSRVAKECPPLPRINMT 114
R GG +T ++T + ++ SR CPP PR ++T
Sbjct: 1559 RIGGGDTTEHIQTHFESKTELLPSRPHAPCPPAPRKHVT 1597
>AF268913-1|AAK54505.1| 1685|Homo sapiens OSA1 nuclear protein
protein.
Length = 1685
Score = 30.3 bits (65), Expect = 3.6
Identities = 13/39 (33%), Positives = 21/39 (53%)
Frame = -1
Query: 230 RKGGCQSTSELRTESDEALDVTSSRVAKECPPLPRINMT 114
R GG +T ++T + ++ SR CPP PR ++T
Sbjct: 1245 RIGGGDTTEHIQTHFESKTELLPSRPHAPCPPAPRKHVT 1283
>AF265208-1|AAF75765.1| 1927|Homo sapiens SWI-SNF complex protein p270
protein.
Length = 1927
Score = 30.3 bits (65), Expect = 3.6
Identities = 13/39 (33%), Positives = 21/39 (53%)
Frame = -1
Query: 230 RKGGCQSTSELRTESDEALDVTSSRVAKECPPLPRINMT 114
R GG +T ++T + ++ SR CPP PR ++T
Sbjct: 1487 RIGGGDTTEHIQTHFESKTELLPSRPHAPCPPAPRKHVT 1525
>AF231056-1|AAG33967.1| 2285|Homo sapiens BRG1-Associated Factor 250a
protein.
Length = 2285
Score = 30.3 bits (65), Expect = 3.6
Identities = 13/39 (33%), Positives = 21/39 (53%)
Frame = -1
Query: 230 RKGGCQSTSELRTESDEALDVTSSRVAKECPPLPRINMT 114
R GG +T ++T + ++ SR CPP PR ++T
Sbjct: 1845 RIGGGDTTEHIQTHFESKTELLPSRPHAPCPPAPRKHVT 1883
>AF219114-1|AAG17549.2| 1939|Homo sapiens chromatin remodelling factor
p250 protein.
Length = 1939
Score = 30.3 bits (65), Expect = 3.6
Identities = 13/39 (33%), Positives = 21/39 (53%)
Frame = -1
Query: 230 RKGGCQSTSELRTESDEALDVTSSRVAKECPPLPRINMT 114
R GG +T ++T + ++ SR CPP PR ++T
Sbjct: 1499 RIGGGDTTEHIQTHFESKTELLPSRPHAPCPPAPRKHVT 1537
>M33518-1|AAA35586.1| 2142|Homo sapiens protein ( Human
HLA-B-associated transcript 2 (BAT2) gene, 3' end. ).
Length = 2142
Score = 29.9 bits (64), Expect = 4.7
Identities = 17/36 (47%), Positives = 21/36 (58%), Gaps = 2/36 (5%)
Frame = -3
Query: 246 SKPPDPERWLPK-YERTAYRKRRG-IRRDVIKGSQG 145
+ PPD RW+PK +ERT R G RR GS+G
Sbjct: 2097 ASPPDALRWIPKPWERTGPPPREGPSRRAEEPGSRG 2132
>M33509-1|AAA35585.1| 2142|Homo sapiens protein ( Human
HLA-B-associated transcript 2 (BAT2) mRNA, complete cds.
).
Length = 2142
Score = 29.9 bits (64), Expect = 4.7
Identities = 17/36 (47%), Positives = 21/36 (58%), Gaps = 2/36 (5%)
Frame = -3
Query: 246 SKPPDPERWLPK-YERTAYRKRRG-IRRDVIKGSQG 145
+ PPD RW+PK +ERT R G RR GS+G
Sbjct: 2097 ASPPDALRWIPKPWERTGPPPREGPSRRAEEPGSRG 2132
>BX511262-1|CAI95572.1| 2157|Homo sapiens HLA-B associated transcript
2 protein.
Length = 2157
Score = 29.9 bits (64), Expect = 4.7
Identities = 17/36 (47%), Positives = 21/36 (58%), Gaps = 2/36 (5%)
Frame = -3
Query: 246 SKPPDPERWLPK-YERTAYRKRRG-IRRDVIKGSQG 145
+ PPD RW+PK +ERT R G RR GS+G
Sbjct: 2112 ASPPDALRWIPKPWERTGPPPREGPSRRAEEPGSRG 2147
>BC060668-1|AAH60668.1| 2157|Homo sapiens HLA-B associated transcript
2 protein.
Length = 2157
Score = 29.9 bits (64), Expect = 4.7
Identities = 17/36 (47%), Positives = 21/36 (58%), Gaps = 2/36 (5%)
Frame = -3
Query: 246 SKPPDPERWLPK-YERTAYRKRRG-IRRDVIKGSQG 145
+ PPD RW+PK +ERT R G RR GS+G
Sbjct: 2112 ASPPDALRWIPKPWERTGPPPREGPSRRAEEPGSRG 2147
>BC042295-1|AAH42295.1| 2157|Homo sapiens BAT2 protein protein.
Length = 2157
Score = 29.9 bits (64), Expect = 4.7
Identities = 17/36 (47%), Positives = 21/36 (58%), Gaps = 2/36 (5%)
Frame = -3
Query: 246 SKPPDPERWLPK-YERTAYRKRRG-IRRDVIKGSQG 145
+ PPD RW+PK +ERT R G RR GS+G
Sbjct: 2112 ASPPDALRWIPKPWERTGPPPREGPSRRAEEPGSRG 2147
>BC030127-1|AAH30127.1| 696|Homo sapiens Similar to HLA-B
associated transcript 2 protein.
Length = 696
Score = 29.9 bits (64), Expect = 4.7
Identities = 17/36 (47%), Positives = 21/36 (58%), Gaps = 2/36 (5%)
Frame = -3
Query: 246 SKPPDPERWLPK-YERTAYRKRRG-IRRDVIKGSQG 145
+ PPD RW+PK +ERT R G RR GS+G
Sbjct: 651 ASPPDALRWIPKPWERTGPPPREGPSRRAEEPGSRG 686
>BA000025-31|BAB63391.1| 2157|Homo sapiens BAT2 protein.
Length = 2157
Score = 29.9 bits (64), Expect = 4.7
Identities = 17/36 (47%), Positives = 21/36 (58%), Gaps = 2/36 (5%)
Frame = -3
Query: 246 SKPPDPERWLPK-YERTAYRKRRG-IRRDVIKGSQG 145
+ PPD RW+PK +ERT R G RR GS+G
Sbjct: 2112 ASPPDALRWIPKPWERTGPPPREGPSRRAEEPGSRG 2147
>AL805934-4|CAI18500.1| 2157|Homo sapiens HLA-B associated transcript
2 protein.
Length = 2157
Score = 29.9 bits (64), Expect = 4.7
Identities = 17/36 (47%), Positives = 21/36 (58%), Gaps = 2/36 (5%)
Frame = -3
Query: 246 SKPPDPERWLPK-YERTAYRKRRG-IRRDVIKGSQG 145
+ PPD RW+PK +ERT R G RR GS+G
Sbjct: 2112 ASPPDALRWIPKPWERTGPPPREGPSRRAEEPGSRG 2147
>AL662847-63|CAI17698.2| 2157|Homo sapiens HLA-B associated transcript
2 protein.
Length = 2157
Score = 29.9 bits (64), Expect = 4.7
Identities = 17/36 (47%), Positives = 21/36 (58%), Gaps = 2/36 (5%)
Frame = -3
Query: 246 SKPPDPERWLPK-YERTAYRKRRG-IRRDVIKGSQG 145
+ PPD RW+PK +ERT R G RR GS+G
Sbjct: 2112 ASPPDALRWIPKPWERTGPPPREGPSRRAEEPGSRG 2147
>AL662801-47|CAI18313.1| 2157|Homo sapiens HLA-B associated transcript
2 protein.
Length = 2157
Score = 29.9 bits (64), Expect = 4.7
Identities = 17/36 (47%), Positives = 21/36 (58%), Gaps = 2/36 (5%)
Frame = -3
Query: 246 SKPPDPERWLPK-YERTAYRKRRG-IRRDVIKGSQG 145
+ PPD RW+PK +ERT R G RR GS+G
Sbjct: 2112 ASPPDALRWIPKPWERTGPPPREGPSRRAEEPGSRG 2147
>AB210034-1|BAE06116.1| 1537|Homo sapiens C6orf21 variant protein
protein.
Length = 1537
Score = 29.9 bits (64), Expect = 4.7
Identities = 17/36 (47%), Positives = 21/36 (58%), Gaps = 2/36 (5%)
Frame = -3
Query: 246 SKPPDPERWLPK-YERTAYRKRRG-IRRDVIKGSQG 145
+ PPD RW+PK +ERT R G RR GS+G
Sbjct: 1492 ASPPDALRWIPKPWERTGPPPREGPSRRAEEPGSRG 1527
>AK126510-1|BAC86575.1| 213|Homo sapiens protein ( Homo sapiens
cDNA FLJ44546 fis, clone UTERU3006008. ).
Length = 213
Score = 29.5 bits (63), Expect = 6.2
Identities = 24/77 (31%), Positives = 30/77 (38%), Gaps = 4/77 (5%)
Frame = -1
Query: 347 ASRNNLPELPXLSWDRRRKRNASATANSRRT-QTSPNLPIRKGGCQ---STSELRTESDE 180
A+ N +LP SW +AS +NSR Q P LP G + S T S
Sbjct: 99 AAPNPAGDLPGGSWSSPSHPDASLRSNSRANFQLQPLLPPAGGASHRPPTPSIPSTHSPT 158
Query: 179 ALDVTSSRVAKECPPLP 129
R + CPP P
Sbjct: 159 PCGSLQKRPGRLCPPAP 175
>AB209421-1|BAD92658.1| 446|Homo sapiens amiloride-sensitive cation
channel 3 isoform c variant protein.
Length = 446
Score = 29.1 bits (62), Expect = 8.2
Identities = 10/20 (50%), Positives = 13/20 (65%)
Frame = -1
Query: 449 SCRPWTSLRRKXILTPWNRR 390
+C PWTS R + PW+RR
Sbjct: 397 TCWPWTSSLRPSTMRPWSRR 416
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 61,219,803
Number of Sequences: 237096
Number of extensions: 1198430
Number of successful extensions: 3363
Number of sequences better than 10.0: 33
Number of HSP's better than 10.0 without gapping: 3240
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3363
length of database: 76,859,062
effective HSP length: 84
effective length of database: 56,942,998
effective search space used: 4156838854
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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