Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc15m16
         (473 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U80840-12|AAB37925.1|  694|Caenorhabditis elegans Hypothetical p...    60   6e-10
Z83316-8|CAB54186.1|  409|Caenorhabditis elegans Hypothetical pr...    29   1.3  
U41538-2|AAG00010.1|  997|Caenorhabditis elegans Hypothetical pr...    28   3.9  
U00050-10|AAA50701.1|  153|Caenorhabditis elegans Myosin light c...    28   3.9  
L03412-1|AAA28112.1|  153|Caenorhabditis elegans alkali myosin l...    28   3.9  
U97196-1|AAK68667.2| 3279|Caenorhabditis elegans Hypothetical pr...    27   9.1  
U40059-1|AAA81138.3|  867|Caenorhabditis elegans Hypothetical pr...    27   9.1  

>U80840-12|AAB37925.1|  694|Caenorhabditis elegans Hypothetical
           protein F08D12.1 protein.
          Length = 694

 Score = 60.5 bits (140), Expect = 6e-10
 Identities = 39/115 (33%), Positives = 62/115 (53%), Gaps = 3/115 (2%)
 Frame = -3

Query: 471 RAXSXAEQLPPLDQLETKXDIDALESSKWMMGAKVVKKTVQSKQEQSPGTPGFELGQXXX 292
           +A S + +L P + +E   ++D LE S W++  +   K  Q K+ +SP T      +   
Sbjct: 539 KAESLSAKLFP-ETMEVDVNVDELEDSDWILYGE---KYRQKKEAKSPQTAEIAATRKLK 594

Query: 291 XXXXXXXK--LPPNADLSKPPDPERWLPKYERTAY-RKRRGIRRDVIKGSQGMST 136
                  K  LP N + +  PDPERWLP+ ER+ Y RKR+   R++ +G+QG S+
Sbjct: 595 IATKRKRKIRLPKNYNSAVTPDPERWLPRQERSTYKRKRKNREREIGRGTQGSSS 649


>Z83316-8|CAB54186.1|  409|Caenorhabditis elegans Hypothetical
           protein B0379.7 protein.
          Length = 409

 Score = 29.5 bits (63), Expect = 1.3
 Identities = 18/67 (26%), Positives = 32/67 (47%)
 Frame = -1

Query: 377 ELKSSRRLFKASRNNLPELPXLSWDRRRKRNASATANSRRTQTSPNLPIRKGGCQSTSEL 198
           E K S+++ K  +N   +    S  R+ K+N  +   S  T   P     + G Q+ +EL
Sbjct: 211 ESKKSKKI-KKKKNKKSKDKKKSNSRKNKKNKKSKGKSTSTSEPPTPNQPETGVQTANEL 269

Query: 197 RTESDEA 177
           R ++ E+
Sbjct: 270 RNDAPES 276


>U41538-2|AAG00010.1|  997|Caenorhabditis elegans Hypothetical
           protein R04E5.8a protein.
          Length = 997

 Score = 27.9 bits (59), Expect = 3.9
 Identities = 22/76 (28%), Positives = 34/76 (44%)
 Frame = -1

Query: 371 KSSRRLFKASRNNLPELPXLSWDRRRKRNASATANSRRTQTSPNLPIRKGGCQSTSELRT 192
           KSSR+  K S+ +  E    S D R   + S       T +S       GG  STSE  +
Sbjct: 675 KSSRKRSKKSKKS-NETSSSSSDERLIHSQSPPTPQNTTSSSDVSSSSSGGSASTSESSS 733

Query: 191 ESDEALDVTSSRVAKE 144
            +  A  V++ + +K+
Sbjct: 734 SAPSAEQVSTPKKSKK 749


>U00050-10|AAA50701.1|  153|Caenorhabditis elegans Myosin light
           chain protein 3, isoforma protein.
          Length = 153

 Score = 27.9 bits (59), Expect = 3.9
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = -3

Query: 228 ERWLPKYERTAYRKRRGIRRDVIKG 154
           E WLP YE+ A  K +G   D  +G
Sbjct: 64  EEWLPMYEQLAKEKEQGTYADFYEG 88


>L03412-1|AAA28112.1|  153|Caenorhabditis elegans alkali myosin
           light chain protein.
          Length = 153

 Score = 27.9 bits (59), Expect = 3.9
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = -3

Query: 228 ERWLPKYERTAYRKRRGIRRDVIKG 154
           E WLP YE+ A  K +G   D  +G
Sbjct: 64  EEWLPMYEQLAKEKEQGTYADFYEG 88


>U97196-1|AAK68667.2| 3279|Caenorhabditis elegans Hypothetical protein
            B0207.5 protein.
          Length = 3279

 Score = 26.6 bits (56), Expect = 9.1
 Identities = 15/33 (45%), Positives = 17/33 (51%)
 Frame = -3

Query: 243  KPPDPERWLPKYERTAYRKRRGIRRDVIKGSQG 145
            +P D E  L   E    R   GIR+ VIKGS G
Sbjct: 2091 RPDDDEGLLEGNEDFGVRITTGIRKRVIKGSPG 2123


>U40059-1|AAA81138.3|  867|Caenorhabditis elegans Hypothetical
           protein K03C7.1 protein.
          Length = 867

 Score = 26.6 bits (56), Expect = 9.1
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = -3

Query: 267 LPPNADLSKPPDPERWLPKYE 205
           LP  A+ SKP  P++W P +E
Sbjct: 48  LPKPAEPSKPAAPKKWRPPWE 68


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,059,314
Number of Sequences: 27780
Number of extensions: 167136
Number of successful extensions: 550
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 530
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 549
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 860942358
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)