Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc15m16
(473 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
DQ342041-1|ABC69933.1| 828|Apis mellifera STIP protein. 25 0.55
AY569703-1|AAS86656.1| 396|Apis mellifera complementary sex det... 22 2.9
AY569701-1|AAS86654.1| 407|Apis mellifera complementary sex det... 22 2.9
AY569700-1|AAS86653.1| 407|Apis mellifera complementary sex det... 22 2.9
AY569699-1|AAS86652.1| 396|Apis mellifera complementary sex det... 22 2.9
DQ325105-1|ABD14119.1| 180|Apis mellifera complementary sex det... 22 3.8
DQ325104-1|ABD14118.1| 180|Apis mellifera complementary sex det... 22 3.8
AY352277-1|AAQ67418.1| 418|Apis mellifera complementary sex det... 22 3.8
AY739659-1|AAU85298.1| 288|Apis mellifera hyperpolarization-act... 21 5.1
AY739658-1|AAU85297.1| 664|Apis mellifera hyperpolarization-act... 21 5.1
AY280848-1|AAQ16312.1| 632|Apis mellifera hyperpolarization-act... 21 5.1
DQ855487-1|ABH88174.1| 125|Apis mellifera chemosensory protein ... 21 8.9
AY921573-1|AAX62923.1| 694|Apis mellifera D2-like dopamine rece... 21 8.9
AY395072-1|AAQ96728.1| 593|Apis mellifera GABA neurotransmitter... 21 8.9
AY395071-1|AAQ96727.1| 646|Apis mellifera GABA neurotransmitter... 21 8.9
AJ973402-1|CAJ01449.1| 125|Apis mellifera hypothetical protein ... 21 8.9
>DQ342041-1|ABC69933.1| 828|Apis mellifera STIP protein.
Length = 828
Score = 24.6 bits (51), Expect = 0.55
Identities = 15/38 (39%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Frame = +2
Query: 146 PWLPLMTSRLMPRRFLY-AVRSYFGNHLSGSGGLERSA 256
PWLPL+ +RL +Y +R G+ L G +RSA
Sbjct: 545 PWLPLLRNRL--DTLIYPIIRRKLGSALGGWHPSDRSA 580
>AY569703-1|AAS86656.1| 396|Apis mellifera complementary sex
determiner protein.
Length = 396
Score = 22.2 bits (45), Expect = 2.9
Identities = 9/21 (42%), Positives = 13/21 (61%)
Frame = -3
Query: 267 LPPNADLSKPPDPERWLPKYE 205
+PPNA +PP R+ P Y+
Sbjct: 376 IPPNAYRFRPPLNPRFGPTYQ 396
>AY569701-1|AAS86654.1| 407|Apis mellifera complementary sex
determiner protein.
Length = 407
Score = 22.2 bits (45), Expect = 2.9
Identities = 9/21 (42%), Positives = 13/21 (61%)
Frame = -3
Query: 267 LPPNADLSKPPDPERWLPKYE 205
+PPNA +PP R+ P Y+
Sbjct: 387 IPPNAYRFRPPLNPRFGPTYQ 407
>AY569700-1|AAS86653.1| 407|Apis mellifera complementary sex
determiner protein.
Length = 407
Score = 22.2 bits (45), Expect = 2.9
Identities = 9/21 (42%), Positives = 13/21 (61%)
Frame = -3
Query: 267 LPPNADLSKPPDPERWLPKYE 205
+PPNA +PP R+ P Y+
Sbjct: 387 IPPNAYRFRPPLNPRFGPTYQ 407
>AY569699-1|AAS86652.1| 396|Apis mellifera complementary sex
determiner protein.
Length = 396
Score = 22.2 bits (45), Expect = 2.9
Identities = 9/21 (42%), Positives = 13/21 (61%)
Frame = -3
Query: 267 LPPNADLSKPPDPERWLPKYE 205
+PPNA +PP R+ P Y+
Sbjct: 376 IPPNAYRFRPPLNPRFGPTYQ 396
>DQ325105-1|ABD14119.1| 180|Apis mellifera complementary sex
determiner protein.
Length = 180
Score = 21.8 bits (44), Expect = 3.8
Identities = 8/21 (38%), Positives = 13/21 (61%)
Frame = -3
Query: 267 LPPNADLSKPPDPERWLPKYE 205
+PPNA +PP R+ P ++
Sbjct: 160 IPPNAYRFRPPQNPRFGPTHQ 180
>DQ325104-1|ABD14118.1| 180|Apis mellifera complementary sex
determiner protein.
Length = 180
Score = 21.8 bits (44), Expect = 3.8
Identities = 8/21 (38%), Positives = 13/21 (61%)
Frame = -3
Query: 267 LPPNADLSKPPDPERWLPKYE 205
+PPNA +PP R+ P ++
Sbjct: 160 IPPNAYRFRPPQNPRFGPTHQ 180
>AY352277-1|AAQ67418.1| 418|Apis mellifera complementary sex
determiner protein.
Length = 418
Score = 21.8 bits (44), Expect = 3.8
Identities = 8/21 (38%), Positives = 13/21 (61%)
Frame = -3
Query: 267 LPPNADLSKPPDPERWLPKYE 205
+PPNA +PP R+ P ++
Sbjct: 398 IPPNAYRFRPPQNPRFGPTHQ 418
>AY739659-1|AAU85298.1| 288|Apis mellifera
hyperpolarization-activated ion channelvariant T
protein.
Length = 288
Score = 21.4 bits (43), Expect = 5.1
Identities = 12/32 (37%), Positives = 14/32 (43%)
Frame = -3
Query: 396 SSKWMMGAKVVKKTVQSKQEQSPGTPGFELGQ 301
S K G V K+E PG PG E+ Q
Sbjct: 6 SGKVHFGVDDVSLYGTPKEEPGPGLPGQEVKQ 37
>AY739658-1|AAU85297.1| 664|Apis mellifera
hyperpolarization-activated ion channelvariant L
protein.
Length = 664
Score = 21.4 bits (43), Expect = 5.1
Identities = 12/32 (37%), Positives = 14/32 (43%)
Frame = -3
Query: 396 SSKWMMGAKVVKKTVQSKQEQSPGTPGFELGQ 301
S K G V K+E PG PG E+ Q
Sbjct: 6 SGKVHFGVDDVSLYGTPKEEPGPGLPGQEVKQ 37
>AY280848-1|AAQ16312.1| 632|Apis mellifera
hyperpolarization-activated ion channel protein.
Length = 632
Score = 21.4 bits (43), Expect = 5.1
Identities = 12/32 (37%), Positives = 14/32 (43%)
Frame = -3
Query: 396 SSKWMMGAKVVKKTVQSKQEQSPGTPGFELGQ 301
S K G V K+E PG PG E+ Q
Sbjct: 6 SGKVHFGVDDVSLYGTPKEEPGPGLPGQEVKQ 37
>DQ855487-1|ABH88174.1| 125|Apis mellifera chemosensory protein 6
protein.
Length = 125
Score = 20.6 bits (41), Expect = 8.9
Identities = 10/21 (47%), Positives = 13/21 (61%), Gaps = 1/21 (4%)
Frame = -3
Query: 243 KPPDPERWLPKYERTA-YRKR 184
+P D ER KY+ T Y+KR
Sbjct: 94 RPKDWERLSAKYDSTGEYKKR 114
>AY921573-1|AAX62923.1| 694|Apis mellifera D2-like dopamine
receptor protein.
Length = 694
Score = 20.6 bits (41), Expect = 8.9
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = +2
Query: 389 FDDSRASISIFVSSWSKGGSCS 454
F+DS A+I+ S+ GGS S
Sbjct: 69 FNDSAAAITSTSPSYPGGGSSS 90
>AY395072-1|AAQ96728.1| 593|Apis mellifera GABA neurotransmitter
transporter-1B protein.
Length = 593
Score = 20.6 bits (41), Expect = 8.9
Identities = 11/34 (32%), Positives = 16/34 (47%)
Frame = -3
Query: 252 DLSKPPDPERWLPKYERTAYRKRRGIRRDVIKGS 151
+LSK DPE W+ + + G+ V GS
Sbjct: 270 NLSKLSDPEVWIDAVTQIFFSYALGLGALVALGS 303
>AY395071-1|AAQ96727.1| 646|Apis mellifera GABA neurotransmitter
transporter-1B protein.
Length = 646
Score = 20.6 bits (41), Expect = 8.9
Identities = 11/34 (32%), Positives = 16/34 (47%)
Frame = -3
Query: 252 DLSKPPDPERWLPKYERTAYRKRRGIRRDVIKGS 151
+LSK DPE W+ + + G+ V GS
Sbjct: 323 NLSKLSDPEVWIDAVTQIFFSYALGLGALVALGS 356
>AJ973402-1|CAJ01449.1| 125|Apis mellifera hypothetical protein
protein.
Length = 125
Score = 20.6 bits (41), Expect = 8.9
Identities = 10/21 (47%), Positives = 13/21 (61%), Gaps = 1/21 (4%)
Frame = -3
Query: 243 KPPDPERWLPKYERTA-YRKR 184
+P D ER KY+ T Y+KR
Sbjct: 94 RPKDWERLSAKYDSTGEYKKR 114
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 112,844
Number of Sequences: 438
Number of extensions: 1892
Number of successful extensions: 16
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 12805416
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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