Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc15m15
         (370 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_1571 - 27935756-27935950,27936048-27936199,27936294-279364...    29   1.5  
04_04_0447 - 25297351-25297575,25297663-25298370,25298824-252991...    27   6.1  
02_05_0566 - 30017031-30017309,30018077-30018172,30018261-300183...    27   6.1  
11_06_0235 + 21588212-21589029,21589426-21591358                       26   8.1  
09_04_0272 - 16278136-16278289,16278873-16278970,16279090-162792...    26   8.1  
01_06_0564 - 30271749-30271759,30271847-30271922,30272878-302729...    26   8.1  

>08_02_1571 -
           27935756-27935950,27936048-27936199,27936294-27936403,
           27936845-27937050,27937212-27937295,27937367-27937525,
           27937621-27937728,27938103-27938278,27938376-27938462,
           27938546-27938657,27938737-27938817,27938890-27938943,
           27939107-27939183,27939262-27939331,27939552-27939666,
           27939840-27939937,27940041-27940179,27940267-27940868,
           27941270-27941399,27941471-27941529
          Length = 937

 Score = 28.7 bits (61), Expect = 1.5
 Identities = 15/39 (38%), Positives = 23/39 (58%)
 Frame = -1

Query: 229 EEEIKYMEIDDGEEIDTVKTFLRNSMSTAEQRDLYALAL 113
           + E+   +   G++ID V TF +    TA+QRDLY  A+
Sbjct: 41  QREVAVTQTIAGKQIDRVFTFDKVFGPTAKQRDLYDQAI 79


>04_04_0447 -
           25297351-25297575,25297663-25298370,25298824-25299123,
           25299876-25299927,25300530-25300673,25301002-25301258,
           25301533-25301739,25301819-25301992,25302409-25302432,
           25302610-25302677,25304607-25304665,25304802-25304877,
           25304965-25305070,25305268-25305377,25305831-25305995,
           25306571-25306656,25306893-25306957,25307280-25307330,
           25309009-25309056,25309677-25309796,25310226-25310301,
           25310780-25310877,25312149-25312404,25313117-25313238
          Length = 1198

 Score = 26.6 bits (56), Expect = 6.1
 Identities = 12/36 (33%), Positives = 21/36 (58%)
 Frame = -1

Query: 349 IERTVTRWHLLSDNVLLKIGEVAQRLNYYLQEYANL 242
           +E  +TR+H   DN   K+ E+ + L+  LQ+  N+
Sbjct: 717 VENALTRYHEACDNAKRKVLELLRGLSSELQDKINV 752


>02_05_0566 -
           30017031-30017309,30018077-30018172,30018261-30018377,
           30018538-30018667,30018866-30019029,30019480-30019485
          Length = 263

 Score = 26.6 bits (56), Expect = 6.1
 Identities = 16/53 (30%), Positives = 28/53 (52%), Gaps = 7/53 (13%)
 Frame = -1

Query: 358 ARMIERTVTRWHLLSDNVLLK-------IGEVAQRLNYYLQEYANLEMQIEEE 221
           +R+ +  + RW +  DN L+K        G+V Q ++  LQ   + EM++E E
Sbjct: 206 SRVGDMQIGRWFMTKDNALVKDSTVNVVSGKVKQEVHLKLQNVESGEMELELE 258


>11_06_0235 + 21588212-21589029,21589426-21591358
          Length = 916

 Score = 26.2 bits (55), Expect = 8.1
 Identities = 11/32 (34%), Positives = 20/32 (62%)
 Frame = -1

Query: 295 IGEVAQRLNYYLQEYANLEMQIEEEIKYMEID 200
           IG +  +L   L E  NL+  ++E IK+++I+
Sbjct: 8   IGTLLPKLGKLLSEEYNLQKNVKEGIKFLKIE 39


>09_04_0272 -
           16278136-16278289,16278873-16278970,16279090-16279230,
           16279701-16279865,16279941-16280117,16280330-16280510,
           16280784-16280829,16281178-16281241,16281331-16281353,
           16281964-16282036,16282410-16282541,16283343-16283429,
           16283488-16283700
          Length = 517

 Score = 26.2 bits (55), Expect = 8.1
 Identities = 10/29 (34%), Positives = 18/29 (62%)
 Frame = -3

Query: 329 LAFIVG*CIIKNWRGRPTTKLLFARIRKL 243
           +A + G C++  W+G PTT L+   + K+
Sbjct: 203 IALVCGNCVV--WKGAPTTPLITIAMTKI 229


>01_06_0564 -
           30271749-30271759,30271847-30271922,30272878-30272919,
           30273065-30273206,30273278-30273339,30273460-30273526,
           30273644-30273834
          Length = 196

 Score = 26.2 bits (55), Expect = 8.1
 Identities = 9/34 (26%), Positives = 22/34 (64%)
 Frame = -1

Query: 289 EVAQRLNYYLQEYANLEMQIEEEIKYMEIDDGEE 188
           ++ Q     L++  ++   +E+++++M +DDGEE
Sbjct: 83  DIRQERRAELEKVGSMCDLLEKQLRFMTVDDGEE 116


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,880,487
Number of Sequences: 37544
Number of extensions: 106539
Number of successful extensions: 324
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 321
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 324
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 576724416
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)