Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc15m13
         (656 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1739.10 |mug33||conserved fungal protein|Schizosaccharomyces...    27   2.4  
SPAC4G8.12c |||alpha-1,2-mannosyltransferase |Schizosaccharomyce...    24   2.5  
SPAC328.09 |||2-oxoadipate and 2-oxoglutarate transporter |Schiz...    27   3.1  
SPBC15D4.02 |||transcription factor, zf-fungal binuclear cluster...    27   3.1  
SPAC4H3.03c |||glucan 1,4-alpha-glucosidase |Schizosaccharomyces...    26   4.2  
SPAC222.07c |hri2||eIF2 alpha kinase Hri2|Schizosaccharomyces po...    26   4.2  
SPAC2C4.15c |ubx2|ucp13|UBX domain protein Ubx2|Schizosaccharomy...    25   7.3  
SPCC1672.12c |||DUF410 family protein|Schizosaccharomyces pombe|...    25   7.3  
SPBC530.01 |gyp1||GTPase activating protein Gyp1 |Schizosaccharo...    25   9.6  
SPAC25G10.08 |||translation initiation factor eIF3b |Schizosacch...    25   9.6  
SPBC17A3.01c |tim50|SPBC8D2.21c|TIM23 translocase complex subuni...    25   9.6  
SPAC27F1.07 |||dolichyl-diphospho-oligosaccharide-protein glycos...    25   9.6  

>SPCC1739.10 |mug33||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 336

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = +3

Query: 348 ANSRKPFLFYNEDYYCEKPKRYFHTNKVIFEK 443
           +N  KP + YN DY  E  K  F T+ ++ ++
Sbjct: 52  SNCSKPLVGYNSDYLDEHAKDGFRTSVIVRQR 83


>SPAC4G8.12c |||alpha-1,2-mannosyltransferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 533

 Score = 23.8 bits (49), Expect(2) = 2.5
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = +1

Query: 325 LSQSWTNVPILANPFCSTTKIIIVRSP 405
           L+  +TN+P+L  P     K+  VR P
Sbjct: 271 LTHFFTNMPLLCGPLIFVPKLWDVRKP 297



 Score = 21.4 bits (43), Expect(2) = 2.5
 Identities = 7/16 (43%), Positives = 12/16 (75%)
 Frame = +1

Query: 220 NQLRQRNKHGLHTRQT 267
           +Q+   ++HGLH+R T
Sbjct: 257 SQIENLSQHGLHSRLT 272


>SPAC328.09 |||2-oxoadipate and 2-oxoglutarate transporter
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 298

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 10/28 (35%), Positives = 18/28 (64%)
 Frame = +2

Query: 158 PLELSTRRLNSIKRAAQHNRVINCDSEI 241
           P EL   RL  +K A+++N  ++C ++I
Sbjct: 124 PFELMKIRLQDVKNASKYNGTVDCFTKI 151


>SPBC15D4.02 |||transcription factor, zf-fungal binuclear cluster
           type|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 419

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 11/37 (29%), Positives = 15/37 (40%)
 Frame = +1

Query: 115 PLKLVHSGEICALQSFGIVDASPKFNKTRRSTQSCNQ 225
           P   +H    C L   G+VD      K  +  QSC +
Sbjct: 356 PTPAIHIARACLLAVHGVVDLGDLQMKVEKCVQSCEE 392


>SPAC4H3.03c |||glucan 1,4-alpha-glucosidase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 649

 Score = 26.2 bits (55), Expect = 4.2
 Identities = 8/28 (28%), Positives = 19/28 (67%)
 Frame = -1

Query: 551 QQRKFVFASVVFWQAIIKKIRKQFSASI 468
           Q+R F+++ ++ W A+ + +R  F+ S+
Sbjct: 437 QERNFLYSKIMLWVALDRALRIAFTRSL 464


>SPAC222.07c |hri2||eIF2 alpha kinase Hri2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 639

 Score = 26.2 bits (55), Expect = 4.2
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = +3

Query: 414 FHTNKVIFEKLDPYATNINRCRKL 485
           F    V+FE L P+ TN+ R  KL
Sbjct: 518 FSLGMVLFELLHPFQTNMERATKL 541


>SPAC2C4.15c |ubx2|ucp13|UBX domain protein Ubx2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 427

 Score = 25.4 bits (53), Expect = 7.3
 Identities = 12/38 (31%), Positives = 17/38 (44%)
 Frame = +3

Query: 528 RKNKFALLFRLLEPVIKQTGTSSALTAVSDQSRWLEIN 641
           R ++ A LFR    +I       A    S Q RW+ +N
Sbjct: 141 RASRLAKLFRPPYDIISNLSLDEARIEASSQKRWILVN 178


>SPCC1672.12c |||DUF410 family protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 303

 Score = 25.4 bits (53), Expect = 7.3
 Identities = 10/11 (90%), Positives = 10/11 (90%)
 Frame = -2

Query: 484 NFLHLLIFVAY 452
           NFLHLLIF AY
Sbjct: 228 NFLHLLIFTAY 238


>SPBC530.01 |gyp1||GTPase activating protein Gyp1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 514

 Score = 25.0 bits (52), Expect = 9.6
 Identities = 12/20 (60%), Positives = 14/20 (70%)
 Frame = +3

Query: 60  KKYSFCCTQSWLWNGSTAAT 119
           KK S   T S LWNGS++AT
Sbjct: 6   KKSSALKTLSSLWNGSSSAT 25


>SPAC25G10.08 |||translation initiation factor eIF3b
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 725

 Score = 25.0 bits (52), Expect = 9.6
 Identities = 17/76 (22%), Positives = 28/76 (36%)
 Frame = +3

Query: 378 NEDYYCEKPKRYFHTNKVIFEKLDPYATNINRCRKLLTDFFDYCLPKYYRRKNKFALLFR 557
           N DY C K  R+  T K  F  L+ +          + D  D  L   +  K+    +  
Sbjct: 416 NGDYLCVKVDRHTKTKKSTFSNLEIFRIREKNIPVEVVDLKDVVLNFAWEPKSDRFAIIS 475

Query: 558 LLEPVIKQTGTSSALT 605
             + V+  T   + L+
Sbjct: 476 ANDQVLNSTNVKTNLS 491


>SPBC17A3.01c |tim50|SPBC8D2.21c|TIM23 translocase complex subunit
           Tim50 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 452

 Score = 25.0 bits (52), Expect = 9.6
 Identities = 14/37 (37%), Positives = 20/37 (54%), Gaps = 2/37 (5%)
 Frame = +3

Query: 366 FLFYNEDYY--CEKPKRYFHTNKVIFEKLDPYATNIN 470
           FL Y   YY      ++Y  T K I +K+DPY  +I+
Sbjct: 209 FLGYLSMYYEVVIFTRQYLATAKPIIDKIDPYHVSIS 245


>SPAC27F1.07 |||dolichyl-diphospho-oligosaccharide-protein
           glycosyltransferase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 450

 Score = 25.0 bits (52), Expect = 9.6
 Identities = 9/15 (60%), Positives = 12/15 (80%)
 Frame = +2

Query: 596 GVNGGIRPKPVARDQ 640
           G++GG+RP P A DQ
Sbjct: 115 GLDGGVRPLPAAVDQ 129


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,818,016
Number of Sequences: 5004
Number of extensions: 59697
Number of successful extensions: 185
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 180
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 185
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 297805304
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)