Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc15m13
         (656 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_1293 - 25945888-25946026,25946257-25946315,25946458-259465...    29   2.5  
02_01_0157 - 1090653-1090886,1091205-1091361,1091538-1091638,109...    28   5.7  
11_06_0559 + 24972403-24972445,24972590-24972680,24973911-249740...    28   7.5  
10_08_0440 + 17930970-17931297,17931682-17931905,17932439-179324...    27   9.9  
02_01_0461 - 3328662-3329087,3329124-3329201,3329370-3329597,333...    27   9.9  

>08_02_1293 -
           25945888-25946026,25946257-25946315,25946458-25946543,
           25946800-25946845,25946953-25947405
          Length = 260

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 25/75 (33%), Positives = 33/75 (44%), Gaps = 2/75 (2%)
 Frame = +1

Query: 91  GSGMVQRRPLKLVHSGEICALQSFGIVDASPKFNKTRRSTQSCNQLRQRNKHGLHTR--Q 264
           G G   R+P  +       ALQSF  VD +P  N  R + QS   L  +    L  R   
Sbjct: 79  GIGEFLRQPAGVESLLNTRALQSFAAVDEAPGANTFRCTLQSIGFLGFQVAPVLDLRVAP 138

Query: 265 TCANRCTLRQTRCQF 309
           TC + CT+    C+F
Sbjct: 139 TC-HDCTVEMLSCRF 152


>02_01_0157 -
           1090653-1090886,1091205-1091361,1091538-1091638,
           1091786-1091900,1092940-1093003,1093107-1093209,
           1093331-1093432,1093542-1093617,1093672-1093790,
           1093918-1094100,1094378-1094499,1095605-1095944
          Length = 571

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 15/40 (37%), Positives = 19/40 (47%)
 Frame = +2

Query: 11  FTTIGLKNKFAFESADKEIFFLLYTIVALEWFNGGHLNSF 130
           FT   L  KF     +K     ++  V L+W NG HL SF
Sbjct: 343 FTIDDLVEKFTINRVNKS--GAVFDAVKLKWMNGQHLRSF 380


>11_06_0559 +
           24972403-24972445,24972590-24972680,24973911-24974030,
           24974121-24974237,24974745-24974840,24975317-24975610,
           24977153-24977258,24977365-24977566,24977671-24977792
          Length = 396

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 19/65 (29%), Positives = 30/65 (46%)
 Frame = +2

Query: 83  TIVALEWFNGGHLNSFTLEKSALYNPLELSTRRLNSIKRAAQHNRVINCDSEINMDYIRG 262
           T +ALEW      + F   KS+L +    + R       AAQHN +++C  E +   +  
Sbjct: 192 TALALEWGMEPPPDPFQKPKSSLVDQEAQTLRAPQQTSDAAQHN-IVSCKEEPSQQILPI 250

Query: 263 KRVRT 277
            + RT
Sbjct: 251 HQPRT 255


>10_08_0440 +
           17930970-17931297,17931682-17931905,17932439-17932465,
           17933747-17934340
          Length = 390

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 20/69 (28%), Positives = 34/69 (49%)
 Frame = +2

Query: 20  IGLKNKFAFESADKEIFFLLYTIVALEWFNGGHLNSFTLEKSALYNPLELSTRRLNSIKR 199
           + LK K + ES DK++ FL   +  +   +G HL     E ++  + LEL+   +     
Sbjct: 216 VALKVKGSIESEDKDLSFLAVQLTRISNISGTHL--INKEYTSKLSTLELTFGYIVRSVE 273

Query: 200 AAQHNRVIN 226
           A  + RVI+
Sbjct: 274 ATINVRVID 282


>02_01_0461 -
           3328662-3329087,3329124-3329201,3329370-3329597,
           3330181-3330204
          Length = 251

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 13/38 (34%), Positives = 19/38 (50%)
 Frame = +1

Query: 190 NKTRRSTQSCNQLRQRNKHGLHTRQTCANRCTLRQTRC 303
           ++T +   SC   + R + G +TR   AN    RQ RC
Sbjct: 151 SRTVKDETSCRICQTRGQLGTNTRAGVANTARARQWRC 188


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,538,513
Number of Sequences: 37544
Number of extensions: 355918
Number of successful extensions: 808
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 792
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 808
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1644004708
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)