Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc15m13
(656 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY130758-5|AAN61521.1| 2693|Caenorhabditis elegans 301KDa_2 prot... 29 3.8
AY130758-4|AAN61520.1| 2708|Caenorhabditis elegans 301KDa_1 prot... 29 3.8
AY130758-2|AAN61518.1| 18519|Caenorhabditis elegans 2MDa_2 prote... 29 3.8
AY130758-1|AAN61517.1| 18534|Caenorhabditis elegans 2MDa_1 prote... 29 3.8
Z77666-12|CAJ43911.2| 896|Caenorhabditis elegans Hypothetical p... 28 5.1
Z77666-9|CAJ43912.1| 541|Caenorhabditis elegans Hypothetical pr... 28 5.1
Z77666-8|CAJ43910.1| 493|Caenorhabditis elegans Hypothetical pr... 28 5.1
Z77666-7|CAB01228.1| 1221|Caenorhabditis elegans Hypothetical pr... 28 5.1
Z81125-10|CAB03385.3| 3102|Caenorhabditis elegans Hypothetical p... 28 6.7
U80450-3|AAB37828.1| 265|Caenorhabditis elegans C.elegans y-box... 28 6.7
L14745-12|AAR25659.1| 366|Caenorhabditis elegans Hypothetical p... 28 6.7
AL008585-1|CAA15432.3| 3102|Caenorhabditis elegans Hypothetical ... 28 6.7
AF074902-1|AAC26793.1| 3102|Caenorhabditis elegans laminin alpha... 28 6.7
>AY130758-5|AAN61521.1| 2693|Caenorhabditis elegans 301KDa_2 protein
protein.
Length = 2693
Score = 28.7 bits (61), Expect = 3.8
Identities = 13/31 (41%), Positives = 19/31 (61%)
Frame = +1
Query: 139 EICALQSFGIVDASPKFNKTRRSTQSCNQLR 231
E+ +QS V A PKFN++ S Q+C + R
Sbjct: 2574 ELTVVQSTKTVGAKPKFNESPISVQTCEKNR 2604
>AY130758-4|AAN61520.1| 2708|Caenorhabditis elegans 301KDa_1 protein
protein.
Length = 2708
Score = 28.7 bits (61), Expect = 3.8
Identities = 13/31 (41%), Positives = 19/31 (61%)
Frame = +1
Query: 139 EICALQSFGIVDASPKFNKTRRSTQSCNQLR 231
E+ +QS V A PKFN++ S Q+C + R
Sbjct: 2589 ELTVVQSTKTVGAKPKFNESPISVQTCEKNR 2619
>AY130758-2|AAN61518.1| 18519|Caenorhabditis elegans 2MDa_2 protein
protein.
Length = 18519
Score = 28.7 bits (61), Expect = 3.8
Identities = 13/31 (41%), Positives = 19/31 (61%)
Frame = +1
Query: 139 EICALQSFGIVDASPKFNKTRRSTQSCNQLR 231
E+ +QS V A PKFN++ S Q+C + R
Sbjct: 18400 ELTVVQSTKTVGAKPKFNESPISVQTCEKNR 18430
>AY130758-1|AAN61517.1| 18534|Caenorhabditis elegans 2MDa_1 protein
protein.
Length = 18534
Score = 28.7 bits (61), Expect = 3.8
Identities = 13/31 (41%), Positives = 19/31 (61%)
Frame = +1
Query: 139 EICALQSFGIVDASPKFNKTRRSTQSCNQLR 231
E+ +QS V A PKFN++ S Q+C + R
Sbjct: 18415 ELTVVQSTKTVGAKPKFNESPISVQTCEKNR 18445
>Z77666-12|CAJ43911.2| 896|Caenorhabditis elegans Hypothetical
protein K08E7.5c protein.
Length = 896
Score = 28.3 bits (60), Expect = 5.1
Identities = 11/23 (47%), Positives = 18/23 (78%)
Frame = +2
Query: 584 RNVVGVNGGIRPKPVARDQSIFR 652
+N VG N I+P+PVA+ Q+I++
Sbjct: 595 QNTVGGNAYIQPQPVAQQQTIYQ 617
>Z77666-9|CAJ43912.1| 541|Caenorhabditis elegans Hypothetical
protein K08E7.5d protein.
Length = 541
Score = 28.3 bits (60), Expect = 5.1
Identities = 11/23 (47%), Positives = 18/23 (78%)
Frame = +2
Query: 584 RNVVGVNGGIRPKPVARDQSIFR 652
+N VG N I+P+PVA+ Q+I++
Sbjct: 240 QNTVGGNAYIQPQPVAQQQTIYQ 262
>Z77666-8|CAJ43910.1| 493|Caenorhabditis elegans Hypothetical
protein K08E7.5b protein.
Length = 493
Score = 28.3 bits (60), Expect = 5.1
Identities = 11/23 (47%), Positives = 18/23 (78%)
Frame = +2
Query: 584 RNVVGVNGGIRPKPVARDQSIFR 652
+N VG N I+P+PVA+ Q+I++
Sbjct: 192 QNTVGGNAYIQPQPVAQQQTIYQ 214
>Z77666-7|CAB01228.1| 1221|Caenorhabditis elegans Hypothetical
protein K08E7.5a protein.
Length = 1221
Score = 28.3 bits (60), Expect = 5.1
Identities = 11/23 (47%), Positives = 18/23 (78%)
Frame = +2
Query: 584 RNVVGVNGGIRPKPVARDQSIFR 652
+N VG N I+P+PVA+ Q+I++
Sbjct: 920 QNTVGGNAYIQPQPVAQQQTIYQ 942
>Z81125-10|CAB03385.3| 3102|Caenorhabditis elegans Hypothetical
protein T22A3.8 protein.
Length = 3102
Score = 27.9 bits (59), Expect = 6.7
Identities = 15/63 (23%), Positives = 34/63 (53%), Gaps = 1/63 (1%)
Frame = +2
Query: 203 AQHNRVINCDSE-INMDYIRGKRVRTGAHYGKRVVNFDQSLY*ANHGQTCQFSQTLSVLQ 379
A+ +++N S + D + + RTG YG + + L AN G+T + ++ +++L+
Sbjct: 2186 AEVEKLMNSTSSGVQEDMEKIRASRTGMEYGAQKLTKVNKLSTANQGRTDKMARNIAILK 2245
Query: 380 RRL 388
++
Sbjct: 2246 AKI 2248
>U80450-3|AAB37828.1| 265|Caenorhabditis elegans C.elegans y-box
protein 3 protein.
Length = 265
Score = 27.9 bits (59), Expect = 6.7
Identities = 16/71 (22%), Positives = 33/71 (46%), Gaps = 1/71 (1%)
Frame = +3
Query: 273 EPVHITANA-LSILTSRYTEPIMDKRANSRKPFLFYNEDYYCEKPKRYFHTNKVIFEKLD 449
E ++T A +++ S+Y ++ + +RKP + ED+ ++ ++ V EK
Sbjct: 127 EAANVTGPAGVNVSGSKYRHQLLSRFRKNRKPKIVVGEDFDSKETEKLVEAPAVAMEKKK 186
Query: 450 PYATNINRCRK 482
N+ RK
Sbjct: 187 QRKQRKNKNRK 197
>L14745-12|AAR25659.1| 366|Caenorhabditis elegans Hypothetical
protein C02F5.3 protein.
Length = 366
Score = 27.9 bits (59), Expect = 6.7
Identities = 13/40 (32%), Positives = 25/40 (62%), Gaps = 1/40 (2%)
Frame = +2
Query: 149 LYNPLE-LSTRRLNSIKRAAQHNRVINCDSEINMDYIRGK 265
+YN ++ +S ++ + R H+ VI+C+ +NMDY+ K
Sbjct: 244 VYNKVDQISIEEIDRLARMP-HHVVISCEMNLNMDYLLEK 282
>AL008585-1|CAA15432.3| 3102|Caenorhabditis elegans Hypothetical
protein T22A3.8 protein.
Length = 3102
Score = 27.9 bits (59), Expect = 6.7
Identities = 15/63 (23%), Positives = 34/63 (53%), Gaps = 1/63 (1%)
Frame = +2
Query: 203 AQHNRVINCDSE-INMDYIRGKRVRTGAHYGKRVVNFDQSLY*ANHGQTCQFSQTLSVLQ 379
A+ +++N S + D + + RTG YG + + L AN G+T + ++ +++L+
Sbjct: 2186 AEVEKLMNSTSSGVQEDMEKIRASRTGMEYGAQKLTKVNKLSTANQGRTDKMARNIAILK 2245
Query: 380 RRL 388
++
Sbjct: 2246 AKI 2248
>AF074902-1|AAC26793.1| 3102|Caenorhabditis elegans laminin alpha
chain protein.
Length = 3102
Score = 27.9 bits (59), Expect = 6.7
Identities = 15/63 (23%), Positives = 34/63 (53%), Gaps = 1/63 (1%)
Frame = +2
Query: 203 AQHNRVINCDSE-INMDYIRGKRVRTGAHYGKRVVNFDQSLY*ANHGQTCQFSQTLSVLQ 379
A+ +++N S + D + + RTG YG + + L AN G+T + ++ +++L+
Sbjct: 2186 AEVEKLMNSTSSGVQEDMEKIRASRTGMEYGAQKLTKVNKLSTANQGRTDKMARNIAILK 2245
Query: 380 RRL 388
++
Sbjct: 2246 AKI 2248
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,677,056
Number of Sequences: 27780
Number of extensions: 346185
Number of successful extensions: 925
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 879
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 925
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1465835342
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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