Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc15m13
         (656 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GP...    22   5.9  
AY647436-1|AAU81605.1|  567|Apis mellifera juvenile hormone este...    22   5.9  
AY526235-1|AAS20468.1|  169|Apis mellifera esterase protein.           22   5.9  
AB083009-1|BAC54130.1|  567|Apis mellifera esterase protein.           22   5.9  
DQ435334-1|ABD92649.1|  135|Apis mellifera OBP17 protein.              21   7.8  

>DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GPCR
           protein.
          Length = 381

 Score = 21.8 bits (44), Expect = 5.9
 Identities = 10/31 (32%), Positives = 15/31 (48%)
 Frame = +1

Query: 313 PVVILSQSWTNVPILANPFCSTTKIIIVRSP 405
           P+  +  +W    I A PF   TK+ +V  P
Sbjct: 158 PIRFILAAWLIALISAIPFAIYTKVNLVEYP 188


>AY647436-1|AAU81605.1|  567|Apis mellifera juvenile hormone
           esterase protein.
          Length = 567

 Score = 21.8 bits (44), Expect = 5.9
 Identities = 13/51 (25%), Positives = 23/51 (45%)
 Frame = +2

Query: 173 TRRLNSIKRAAQHNRVINCDSEINMDYIRGKRVRTGAHYGKRVVNFDQSLY 325
           T+  NS+++A Q    + C +    + IR  R R      + + NF +  Y
Sbjct: 243 TQTENSLEKAKQVGAFMGCPTRNVKEMIRCLRYRPARAIVETLANFMRFYY 293


>AY526235-1|AAS20468.1|  169|Apis mellifera esterase protein.
          Length = 169

 Score = 21.8 bits (44), Expect = 5.9
 Identities = 13/51 (25%), Positives = 23/51 (45%)
 Frame = +2

Query: 173 TRRLNSIKRAAQHNRVINCDSEINMDYIRGKRVRTGAHYGKRVVNFDQSLY 325
           T+  NS+++A Q    + C +    + IR  R R      + + NF +  Y
Sbjct: 114 TQTENSLEKAKQVGAFMGCPTRNVKEMIRCLRYRPARAIVETLANFMRFYY 164


>AB083009-1|BAC54130.1|  567|Apis mellifera esterase protein.
          Length = 567

 Score = 21.8 bits (44), Expect = 5.9
 Identities = 13/51 (25%), Positives = 23/51 (45%)
 Frame = +2

Query: 173 TRRLNSIKRAAQHNRVINCDSEINMDYIRGKRVRTGAHYGKRVVNFDQSLY 325
           T+  NS+++A Q    + C +    + IR  R R      + + NF +  Y
Sbjct: 243 TQTENSLEKAKQVGAFMGCPTRNVKEMIRCLRYRPARAIVETLANFMRFYY 293


>DQ435334-1|ABD92649.1|  135|Apis mellifera OBP17 protein.
          Length = 135

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 6/17 (35%), Positives = 11/17 (64%)
 Frame = +1

Query: 145 CALQSFGIVDASPKFNK 195
           C ++ F +VD +  FN+
Sbjct: 65  CTMKKFNVVDENANFNE 81


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 188,180
Number of Sequences: 438
Number of extensions: 4298
Number of successful extensions: 10
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 19734030
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)