Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc15m12
         (712 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81058-11|CAH60760.1|  201|Caenorhabditis elegans Hypothetical p...    31   0.81 
L25598-1|AAA27942.1|  129|Caenorhabditis elegans Hypothetical pr...    31   1.1  
AF039048-11|AAB94232.1|  421|Caenorhabditis elegans Hypothetical...    31   1.1  
AC024201-3|AAK93866.1|  238|Caenorhabditis elegans Dnaj domain (...    29   2.5  
Z30317-2|CAA82968.2| 1142|Caenorhabditis elegans Hypothetical pr...    29   4.3  

>Z81058-11|CAH60760.1|  201|Caenorhabditis elegans Hypothetical
           protein F11E6.11 protein.
          Length = 201

 Score = 31.1 bits (67), Expect = 0.81
 Identities = 16/44 (36%), Positives = 25/44 (56%)
 Frame = +2

Query: 401 NFSDFFGGFVTPRSRNVMAWPPLFFVGVLSDMLILLSTFP*VYF 532
           +FS FF G + P    ++ WP      VLS +++LLS F  +Y+
Sbjct: 144 SFSVFFNGSIMPDCSYLVIWPTF----VLSFLILLLSIFVIIYY 183


>L25598-1|AAA27942.1|  129|Caenorhabditis elegans Hypothetical
           protein C06G4.4 protein.
          Length = 129

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 19/84 (22%), Positives = 36/84 (42%)
 Frame = -2

Query: 432 VTKPPKKSEKLQQYKKAIAAEQTLRTTADVSSLQNHGESAVFQXXXXXXXXXXXXXXEQK 253
           +++ PK+SEK   YKKA+A ++ ++    +      G+  V                +  
Sbjct: 1   MSEAPKRSEKSADYKKAVAKQRRIKKLRKMKIKDRAGDVVVSDISDVEVVGNGDEESQDD 60

Query: 252 RLYPILNTPLDNFIVAFVNPTYPM 181
            L  +L +  D      V+P++PM
Sbjct: 61  WLNDLLKSDGDGGKAGPVDPSHPM 84


>AF039048-11|AAB94232.1|  421|Caenorhabditis elegans Hypothetical
           protein F16B4.1 protein.
          Length = 421

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 13/27 (48%), Positives = 15/27 (55%)
 Frame = -1

Query: 382 YRCRANAAHHSRCFFFAEPRGECRFSR 302
           + CRA AA   RC F  E R  CR S+
Sbjct: 49  FSCRACAAFFRRCHFLKENRRRCRLSK 75


>AC024201-3|AAK93866.1|  238|Caenorhabditis elegans Dnaj domain
           (prokaryotic heat shockprotein) protein 30 protein.
          Length = 238

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 11/42 (26%), Positives = 28/42 (66%)
 Frame = -1

Query: 550 LWLTISKIYSRER*QQNKHVRQNADKKKRRPCHDVTRARRNK 425
           LW+T++K+++ +R ++ K + + A+++KRR    + +A   +
Sbjct: 146 LWITVTKVFA-DREKKRKMLEERANEEKRRSTEALVQAAEKR 186


>Z30317-2|CAA82968.2| 1142|Caenorhabditis elegans Hypothetical
           protein T16G12.5 protein.
          Length = 1142

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 13/32 (40%), Positives = 19/32 (59%)
 Frame = +3

Query: 492 TCLFCCQRSREYIFDIVNQSVHEVQFLSVGFV 587
           TCLF C     YI DI+  ++  V  LS+G++
Sbjct: 574 TCLFACVEQIPYIKDILKSALDSV--LSIGYI 603


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,606,415
Number of Sequences: 27780
Number of extensions: 292123
Number of successful extensions: 856
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 828
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 856
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1655655746
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)