Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc15m05
(696 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC550.15c |||ribosome biogenesis protein |Schizosaccharomyces ... 30 0.28
SPAC19B12.07c |||human ZNF277P homolog|Schizosaccharomyces pombe... 30 0.28
SPBC146.03c |cut3|smc4, smc4|condensin subunit Cut3|Schizosaccha... 29 0.84
SPAP27G11.15 |slx1||structure-specific endonuclease catalytic su... 28 1.5
SPBP4H10.11c |||long-chain-fatty-acid-CoA ligase |Schizosaccharo... 26 4.5
SPAC823.12 |||zinc finger protein Pep5/Vps11 |Schizosaccharomyce... 26 4.5
SPBC725.04 |||oxalyl-CoA decarboxylase |Schizosaccharomyces pomb... 26 5.9
SPCC1223.01 ||SPCC285.18|ubiquitin-protein ligase E3 |Schizosacc... 25 7.8
>SPCC550.15c |||ribosome biogenesis protein |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 463
Score = 30.3 bits (65), Expect = 0.28
Identities = 19/100 (19%), Positives = 40/100 (40%), Gaps = 2/100 (2%)
Frame = -3
Query: 625 EVDKQFA--ALNKIEDLKCVYCNFDFQDNREAVKHALSNVYHQSAVAETKLNANRADIIS 452
E++ + A + ++ C++C F KH ++ H + E + + +
Sbjct: 192 EIEAELARRSSQRLSPRDCLFCAASFSSFDTCKKHMKAS--HSLYIPEREYLVDEPSLF- 248
Query: 451 VYMKGNYILHSEGASFTCVNCNGVFNSIRSLLMHLVHAEH 332
+Y+ FTC+ CN F S+ ++ H+ H
Sbjct: 249 -----DYLAEKISIGFTCLTCNREFKSLEAVRAHMQQKGH 283
Score = 27.5 bits (58), Expect = 1.9
Identities = 27/100 (27%), Positives = 37/100 (37%), Gaps = 9/100 (9%)
Frame = -3
Query: 409 SFTCVNCNGVFNSIRSLLMHLVHAEHF-------AYRPP--AECTFRYYLELKHNINMLA 257
SF C C FN+ S +H H A PP AE L ++ N
Sbjct: 4 SFACTTCTVAFNNAESQKIHWKSDWHHYNLKRKVASLPPLSAEVFAGKILSIQKQ-NEEV 62
Query: 256 KNKYVYYSFGRFKCGVCDADIEEGENAKRHVLSPKHRENM 137
+ K +Y C VC+ H+ S KHR+N+
Sbjct: 63 QKKAEFYQ----NCEVCNKKFYSEGAYSSHMASKKHRDNL 98
>SPAC19B12.07c |||human ZNF277P homolog|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 319
Score = 30.3 bits (65), Expect = 0.28
Identities = 30/125 (24%), Positives = 53/125 (42%)
Frame = -3
Query: 595 KIEDLKCVYCNFDFQDNREAVKHALSNVYHQSAVAETKLNANRADIISVYMKGNYILHSE 416
KI+ L+C++CN + NR+ + +H LN AD I + + +E
Sbjct: 91 KIKSLQCLFCNNEGLLNRQ---EWFEHSFHVHG-----LNIGLADNIVYINRLLEKIKNE 142
Query: 415 GASFTCVNCNGVFNSIRSLLMHLVHAEHFAYRPPAECTFRYYLELKHNINMLAKNKYVYY 236
SF C+ C+ + + L H+ + HF P + +Y+ IN + K +
Sbjct: 143 LESFRCLCCHVPCKNKKLLREHMNNKRHFRLDPKSSEYDEFYI-----INYASVTKSITI 197
Query: 235 SFGRF 221
S +F
Sbjct: 198 SHSQF 202
>SPBC146.03c |cut3|smc4, smc4|condensin subunit
Cut3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1324
Score = 28.7 bits (61), Expect = 0.84
Identities = 20/67 (29%), Positives = 26/67 (38%)
Frame = -3
Query: 559 DFQDNREAVKHALSNVYHQSAVAETKLNANRADIISVYMKGNYILHSEGASFTCVNCNGV 380
D N E K + N Y TKL +A + S +GN +L S N NG
Sbjct: 595 DVSKNIERKKETVHNTYRNLMSNRTKLEEMKASLSSSRSRGN-VLESLQRLHESDNLNGF 653
Query: 379 FNSIRSL 359
F + L
Sbjct: 654 FGRLGDL 660
>SPAP27G11.15 |slx1||structure-specific endonuclease catalytic
subunit |Schizosaccharomyces pombe|chr 1|||Manual
Length = 271
Score = 27.9 bits (59), Expect = 1.5
Identities = 9/19 (47%), Positives = 13/19 (68%)
Frame = +3
Query: 330 KCSACTKCIKSDRIELNTP 386
KC+ C +CI+SD + N P
Sbjct: 179 KCNLCYECIESDELRANCP 197
>SPBP4H10.11c |||long-chain-fatty-acid-CoA ligase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 689
Score = 26.2 bits (55), Expect = 4.5
Identities = 10/30 (33%), Positives = 15/30 (50%)
Frame = +1
Query: 583 DLRFYSVPQIVCRLRCSRPDGEVWLRSPCV 672
+ + +P + S P GEVW+R P V
Sbjct: 471 EFKLVDIPDLGYYTDSSPPRGEVWIRGPAV 500
>SPAC823.12 |||zinc finger protein Pep5/Vps11 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 906
Score = 26.2 bits (55), Expect = 4.5
Identities = 11/18 (61%), Positives = 14/18 (77%)
Frame = +2
Query: 71 PPQHLLSILLDGGRVLID 124
PP +LL +LL GRVL+D
Sbjct: 533 PPSNLLPLLLKYGRVLLD 550
>SPBC725.04 |||oxalyl-CoA decarboxylase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 574
Score = 25.8 bits (54), Expect = 5.9
Identities = 9/15 (60%), Positives = 11/15 (73%)
Frame = -1
Query: 132 PHTSMRTRPPSSKML 88
PHT + RPPS KM+
Sbjct: 122 PHTKLAVRPPSPKMV 136
>SPCC1223.01 ||SPCC285.18|ubiquitin-protein ligase E3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 732
Score = 25.4 bits (53), Expect = 7.8
Identities = 9/18 (50%), Positives = 11/18 (61%)
Frame = -3
Query: 580 KCVYCNFDFQDNREAVKH 527
KC +CN F D+ E KH
Sbjct: 246 KCEFCNTHFYDDDELFKH 263
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,900,818
Number of Sequences: 5004
Number of extensions: 58972
Number of successful extensions: 177
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 170
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 175
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 321151040
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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