Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc15m05
         (696 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_0124 - 938612-940098,940643-940748                               32   0.50 
09_04_0489 - 18031187-18031579,18032033-18034030,18034102-180342...    30   2.0  
07_03_0383 - 17476271-17479228,17480466-17480750                       29   3.5  
07_03_0265 + 15976331-15976645,15977575-15977784,15977869-159779...    29   3.5  
02_05_0523 - 29755007-29755856,29756381-29756940,29757058-297572...    28   6.2  
10_01_0208 - 2228234-2228254,2228494-2228709,2228796-2228946,222...    28   8.1  
08_02_0858 + 21943679-21943716,21944009-21944177,21945996-21946025     28   8.1  

>07_01_0124 - 938612-940098,940643-940748
          Length = 530

 Score = 31.9 bits (69), Expect = 0.50
 Identities = 15/41 (36%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
 Frame = -3

Query: 271 INMLAKNKYV-YYSFGRFKCGVCDADIEEGENAKRHVLSPK 152
           +N+L K  Y  YY+  RF+C V +AD  +      HV+  K
Sbjct: 90  LNILRKEMYRGYYTLDRFRCHVHEADHTKDHEVSNHVIPSK 130


>09_04_0489 -
           18031187-18031579,18032033-18034030,18034102-18034234,
           18035360-18036108
          Length = 1090

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 14/35 (40%), Positives = 18/35 (51%)
 Frame = -3

Query: 580 KCVYCNFDFQDNREAVKHALSNVYHQSAVAETKLN 476
           +C  CN  FQD    V+H LS  +HQ      K+N
Sbjct: 342 ECQKCNLTFQDQSAYVQHQLS--FHQRKAKRRKVN 374


>07_03_0383 - 17476271-17479228,17480466-17480750
          Length = 1080

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 15/44 (34%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
 Frame = -3

Query: 694  VEHFESNEHMETVAKLLRLAVN-NEVDKQFAALNKIEDLKCVYC 566
            ++H +S + +E +  L  L V+ N+  K+   L  +EDLK V+C
Sbjct: 870  IDHADSLKTIENLPSLRELEVHRNKKLKRILNLESLEDLKVVHC 913


>07_03_0265 +
           15976331-15976645,15977575-15977784,15977869-15977916,
           15978307-15978675,15978736-15978747,15978763-15978870,
           15979156-15979493,15980313-15980430,15983247-15984107,
           15984457-15984750
          Length = 890

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 11/36 (30%), Positives = 22/36 (61%)
 Frame = -1

Query: 171 DMSYRRSIERIWVPHTSMRTRPPSSKMLSKCCGGHK 64
           ++ +++S+E I +   S R R P + +  +CCG H+
Sbjct: 450 EIMFQKSMEEIVIAAPSGRQRFPGTVIKKRCCGWHQ 485


>02_05_0523 -
           29755007-29755856,29756381-29756940,29757058-29757275,
           29757941-29758067
          Length = 584

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 13/29 (44%), Positives = 19/29 (65%)
 Frame = +3

Query: 78  SICLASYSTADASSLMYVAPIFSLCFGDR 164
           S+C+AS S  +  S+M V+ + SL  GDR
Sbjct: 498 SLCMASISLGNYVSIMLVSVVTSLTAGDR 526


>10_01_0208 -
           2228234-2228254,2228494-2228709,2228796-2228946,
           2229031-2229268,2229394-2229604,2229765-2229943,
           2230041-2230151,2230445-2231240
          Length = 640

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 22/80 (27%), Positives = 38/80 (47%)
 Frame = +2

Query: 422 VQDVISLHVNAYYIRSVRVQLRLRDGALVVHIRKRMFDGLTVILKIEVAINAFQIFDFIQ 601
           V  V+   +  YY R  R + R +D   +   R R F G  +I ++E  I+ F +F+F +
Sbjct: 281 VAAVVLCLIVCYYCRWSR-RFR-KDRVRLREKRSRRFRGDELICEMEGEISEFSVFEFRE 338

Query: 602 CRKLFVDFVVHGQTEKFGYG 661
             K   +F    +  + G+G
Sbjct: 339 VIKATDNFSEENKLGEGGFG 358


>08_02_0858 + 21943679-21943716,21944009-21944177,21945996-21946025
          Length = 78

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 16/50 (32%), Positives = 24/50 (48%)
 Frame = -3

Query: 583 LKCVYCNFDFQDNREAVKHALSNVYHQSAVAETKLNANRADIISVYMKGN 434
           ++C  C+  F   RE V H  SN      +A+ K  A +A +  +  KGN
Sbjct: 27  IECPKCHGVFNTRREFVNHKCSNT-RLFMLAQAKKAAKKAVLKQIRNKGN 75


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,102,926
Number of Sequences: 37544
Number of extensions: 392593
Number of successful extensions: 1108
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1071
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1108
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1780264028
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)