Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc15m05
         (696 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB208106-1|BAE72138.1|  111|Apis mellifera Broad complex zinc fi...    25   0.52 
AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly pro...    24   1.2  
L01589-1|AAA27736.1|   81|Apis mellifera zinc finger protein pro...    24   1.6  
L01587-1|AAA27734.1|   69|Apis mellifera zinc finger protein pro...    23   2.8  
AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precur...    23   3.7  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    22   4.8  
AY703685-1|AAU12681.1|  200|Apis mellifera abdominal-A protein.        22   6.4  
AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    22   6.4  

>AB208106-1|BAE72138.1|  111|Apis mellifera Broad complex zinc
           finger domain-Z1 isoform protein.
          Length = 111

 Score = 25.4 bits (53), Expect = 0.52
 Identities = 14/57 (24%), Positives = 25/57 (43%)
 Frame = -3

Query: 406 FTCVNCNGVFNSIRSLLMHLVHAEHFAYRPPAECTFRYYLELKHNINMLAKNKYVYY 236
           F C  CN +  S+  L  H+   ++   RP  E        +  ++N L  +K +Y+
Sbjct: 3   FRCEPCNKILTSLTRLRRHI---QNVHTRPSKEPICNICKRVYSSLNSLRNHKSIYH 56


>AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly
           protein MRJP6 protein.
          Length = 437

 Score = 24.2 bits (50), Expect = 1.2
 Identities = 8/19 (42%), Positives = 15/19 (78%)
 Frame = -3

Query: 283 LKHNINMLAKNKYVYYSFG 227
           L+H++N++ + KY+ Y FG
Sbjct: 31  LEHSMNVIHEWKYIDYDFG 49


>L01589-1|AAA27736.1|   81|Apis mellifera zinc finger protein
           protein.
          Length = 81

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = -3

Query: 409 SFTCVNCNGVFNSIRSLLMHL 347
           SF+C  C  V+ S+ +L MH+
Sbjct: 16  SFSCKYCEKVYVSLGALKMHI 36


>L01587-1|AAA27734.1|   69|Apis mellifera zinc finger protein
           protein.
          Length = 69

 Score = 23.0 bits (47), Expect = 2.8
 Identities = 10/31 (32%), Positives = 12/31 (38%)
 Frame = -3

Query: 424 HSEGASFTCVNCNGVFNSIRSLLMHLVHAEH 332
           HS    + C NC        SL +HL    H
Sbjct: 39  HSNVYQYRCANCTYATKYCHSLKLHLRKYSH 69


>AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precursor
           protein.
          Length = 405

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 14/48 (29%), Positives = 20/48 (41%)
 Frame = -3

Query: 289 LELKHNINMLAKNKYVYYSFGRFKCGVCDADIEEGENAKRHVLSPKHR 146
           +E   N N  A +  V  +F    CG    +IE   N    +L+P  R
Sbjct: 87  VEFSENKNCNAGSLTVKKNFANKYCGNITLNIESTSNKMTVILTPPGR 134


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = -3

Query: 388 NGVFNSIRSLLMHLVHAEHFAY 323
           NGVF SI SLL+  +   H  +
Sbjct: 542 NGVFTSIASLLLLNLSENHIEW 563



 Score = 22.2 bits (45), Expect = 4.8
 Identities = 10/34 (29%), Positives = 12/34 (35%)
 Frame = +3

Query: 66  YDLHSICLASYSTADASSLMYVAPIFSLCFGDRT 167
           Y+ H   L      DA       P    C+ DRT
Sbjct: 739 YEAHCFALCHCCDFDACDCEMTCPAGCKCYNDRT 772


>AY703685-1|AAU12681.1|  200|Apis mellifera abdominal-A protein.
          Length = 200

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 12/44 (27%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
 Frame = +3

Query: 99  STADASSLMYVAPIFSLCFGDRTCRFAFSPSS--MSASQTPHLN 224
           + A +++L   A + +   GD++CR+  S +     AS  P +N
Sbjct: 125 TAASSAALAAAAAVDAATAGDKSCRYTASLAGNVAPASADPMVN 168


>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 17/82 (20%), Positives = 33/82 (40%), Gaps = 1/82 (1%)
 Frame = -3

Query: 406 FTCVNCNGVFNSIRSLLMHLVHAEHFAYRPPAECTF-RYYLELKHNINMLAKNKYVYYSF 230
           + C  C   F     L  H  +  H   +P  +C +      +K N+++   ++ ++   
Sbjct: 92  YRCNICGKTFAVPARLTRH--YRTHTGEKP-YQCEYCSKSFSVKENLSV---HRRIHTKE 145

Query: 229 GRFKCGVCDADIEEGENAKRHV 164
             +KC VC+   E      RH+
Sbjct: 146 RPYKCDVCERAFEHSGKLHRHM 167


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 194,661
Number of Sequences: 438
Number of extensions: 4215
Number of successful extensions: 12
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21317625
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)