Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc15m01
         (697 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC10F6.10 |||protein kinase, RIO family |Schizosaccharomyces p...    58   1e-09
SPBC1703.05 |||protein kinase, RIO family|Schizosaccharomyces po...    30   0.36 
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual    29   0.48 
SPCC569.05c |||spermidine family transporter |Schizosaccharomyce...    27   1.9  
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce...    26   4.5  
SPCP31B10.05 |||tyrosyl-DNA phosphodiesterase |Schizosaccharomyc...    26   5.9  
SPAP27G11.03 |||D123 family|Schizosaccharomyces pombe|chr 1|||Ma...    26   5.9  
SPBC1105.02c |lys4||homocitrate synthase |Schizosaccharomyces po...    25   7.8  

>SPAC10F6.10 |||protein kinase, RIO family |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 521

 Score = 58.0 bits (134), Expect = 1e-09
 Identities = 28/62 (45%), Positives = 39/62 (62%)
 Frame = -3

Query: 695 SEYNILWWDNKCWFIDVSQSVQPDHPNGLEFLLRDCRNVVNFFEKKGVSHVQTAEELFKS 516
           SEYN+L+   K +FIDVSQSV+ DHP  ++FL  D  N+  FF +     + +  +LFK 
Sbjct: 291 SEYNLLYHKGKVYFIDVSQSVEHDHPQSIDFLRMDILNISTFFRRLNAGCL-SLPQLFKF 349

Query: 515 IT 510
           IT
Sbjct: 350 IT 351


>SPBC1703.05 |||protein kinase, RIO family|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 336

 Score = 29.9 bits (64), Expect = 0.36
 Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
 Frame = -3

Query: 695 SEYNILWW-DNKCWFIDVSQSVQPDHPNGLEFLLRDCRNVVNFFEK 561
           +E+NI+   D     ID  Q V   HP+   +  RD + +V +FEK
Sbjct: 222 NEFNIIVREDGTAVVIDFPQMVSTSHPDAQFYFDRDVQCIVQYFEK 267


>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1236

 Score = 29.5 bits (63), Expect = 0.48
 Identities = 18/52 (34%), Positives = 28/52 (53%)
 Frame = +1

Query: 472 TPSNKFTSTSLKPVIDLKSSSAVCTCETPFFSKKLTTLRQSRSKNSNPLGWS 627
           TPS+   S+ +  V  L SSS++ T  +  FS  +TT+    S +S P  +S
Sbjct: 525 TPSSSIISSPMTSV--LSSSSSIPTSSSSDFSSSITTISSGISSSSIPSTFS 574


>SPCC569.05c |||spermidine family transporter |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 576

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 22/78 (28%), Positives = 35/78 (44%), Gaps = 8/78 (10%)
 Frame = -3

Query: 308 NHAAKSKTVDSAANF------GNEVKIDNEITSTASKTSDCR--NIIDHESCFANEFKGT 153
           +H+A S  + +AANF       N+    N  T  +S +S+    N++D E C  +     
Sbjct: 45  SHSATSN-LSTAANFHTRPPIANDENAQNLSTVNSSHSSELSKANLVDVEKCIQDPLLQI 103

Query: 152 IPTNSDGDTSSSRVEKKS 99
            PT  D D     ++ KS
Sbjct: 104 FPTVEDPDRFVFSIDPKS 121


>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1036

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 17/47 (36%), Positives = 23/47 (48%)
 Frame = +1

Query: 478 SNKFTSTSLKPVIDLKSSSAVCTCETPFFSKKLTTLRQSRSKNSNPL 618
           S   TSTS  P+  + S++A     TP  S   TT   + S +S PL
Sbjct: 332 STTATSTSSTPLSSVNSTTATSASSTPLTSVNSTT---ATSASSTPL 375


>SPCP31B10.05 |||tyrosyl-DNA phosphodiesterase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 536

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 20/62 (32%), Positives = 26/62 (41%)
 Frame = -3

Query: 314 MWNHAAKSKTVDSAANFGNEVKIDNEITSTASKTSDCRNIIDHESCFANEFKGTIPTNSD 135
           ++  A  S +  S   +GN  KI     S   K     +IID +S F N FK    T S 
Sbjct: 162 LYPKANDSLSTSSVPEYGNPSKIRKHEGSLDIKDDRNCDIIDVDSAFEN-FKHKSDTRSS 220

Query: 134 GD 129
            D
Sbjct: 221 DD 222


>SPAP27G11.03 |||D123 family|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 319

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 13/39 (33%), Positives = 19/39 (48%)
 Frame = +2

Query: 581 HYDNLEVKTPTH*GGQVAQTEKHQ*TSIYYPTRECYTLI 697
           H D++ V+ P +   +V   E  +    YYP RE   LI
Sbjct: 44  HEDSIYVEQPMNTVEEVDSEEDEESAPAYYPEREAIQLI 82


>SPBC1105.02c |lys4||homocitrate synthase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 418

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 9/36 (25%), Positives = 20/36 (55%)
 Frame = -3

Query: 623 HPNGLEFLLRDCRNVVNFFEKKGVSHVQTAEELFKS 516
           H   + +++     V+NF + KG+    ++E+ F+S
Sbjct: 137 HGKDMTYIIDSATEVINFVKSKGIEVRFSSEDSFRS 172


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,637,475
Number of Sequences: 5004
Number of extensions: 49452
Number of successful extensions: 145
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 143
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 145
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 321151040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)