Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc15m01
         (697 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_0444 + 3357048-3357425,3357841-3357969,3358165-3358284,335...    71   1e-12
04_04_0339 - 24513699-24516827                                         30   1.5  
02_05_0672 + 30775458-30775523,30775594-30775662,30775748-307757...    29   2.7  
01_06_1610 - 38625427-38625726,38625814-38625885,38626001-386261...    29   2.7  
03_06_0568 - 34778408-34778710,34779340-34779411,34779549-347796...    29   3.5  
09_06_0015 - 20234231-20234344,20234846-20234902,20234968-202351...    28   6.2  
06_03_0051 - 16023915-16023944,16024025-16024680,16024808-16025300     28   8.1  

>07_01_0444 +
           3357048-3357425,3357841-3357969,3358165-3358284,
           3358661-3358753,3358935-3359014,3359180-3359293,
           3359530-3359603,3359757-3359833,3360558-3360641,
           3360732-3360824,3360901-3361008,3361130-3361204,
           3361507-3361911
          Length = 609

 Score = 70.5 bits (165), Expect = 1e-12
 Identities = 34/68 (50%), Positives = 46/68 (67%)
 Frame = -3

Query: 695 SEYNILWWDNKCWFIDVSQSVQPDHPNGLEFLLRDCRNVVNFFEKKGVSHVQTAEELFKS 516
           SEYNIL+++   + IDVSQSV  DHP+ LEFL  DC +V +FF+K+GV+ V +  ELF  
Sbjct: 375 SEYNILYFEGHLYIIDVSQSVDLDHPSALEFLKEDCLHVTDFFKKRGVA-VMSVTELFNF 433

Query: 515 ITGFNEVD 492
           +   N  D
Sbjct: 434 VIDQNIAD 441


>04_04_0339 - 24513699-24516827
          Length = 1042

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 17/56 (30%), Positives = 30/56 (53%), Gaps = 2/56 (3%)
 Frame = +1

Query: 478 SNKFTSTSLKPVIDLKSSSAVCTCETPFFSKKLTTLRQSRSK-NSNPLGWSG-CTD 639
           +++ T + L+P++ LK  S +C  E   F      + Q +++  S  L W+G CTD
Sbjct: 716 NHEHTISELRPLVSLKELS-ICNMENASFDDARNVILQKKNRLVSLALSWTGSCTD 770


>02_05_0672 +
           30775458-30775523,30775594-30775662,30775748-30775797,
           30775869-30775929,30776016-30776381,30776542-30776754,
           30776826-30777056,30777502-30777615,30777703-30778495,
           30778535-30778905,30779007-30779378,30779448-30780438,
           30781068-30781141,30781953-30782030,30782448-30782525
          Length = 1308

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 14/34 (41%), Positives = 20/34 (58%)
 Frame = -3

Query: 290 KTVDSAANFGNEVKIDNEITSTASKTSDCRNIID 189
           K VDSA N   + K +N I + A K  +C+ +ID
Sbjct: 132 KIVDSAKNEDPQRKCNNHIDNVAMKPVECKLVID 165


>01_06_1610 -
           38625427-38625726,38625814-38625885,38626001-38626117,
           38626509-38626674,38626768-38626815,38626889-38626962,
           38627126-38627243,38627332-38627420,38627512-38627687,
           38627785-38627898,38627981-38628051,38628431-38628477,
           38628581-38628721,38629095-38629136
          Length = 524

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 17/47 (36%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
 Frame = -3

Query: 695 SEYNILWWDN-KCWFIDVSQSVQPDHPNGLEFLLRDCRNVVNFFEKK 558
           +E+NI+  D+ K   ID  Q V   H N   F  RD   +  FF K+
Sbjct: 261 NEFNIMIDDDEKVTMIDFPQMVSVKHRNAQMFFDRDIECIYKFFRKR 307


>03_06_0568 -
           34778408-34778710,34779340-34779411,34779549-34779635,
           34779722-34779880,34780641-34780739,34780823-34780903,
           34781007-34781461,34781550-34781679,34781952-34782743
          Length = 725

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 12/31 (38%), Positives = 22/31 (70%)
 Frame = -3

Query: 308 NHAAKSKTVDSAANFGNEVKIDNEITSTASK 216
           + A+K ++VD+  + GN  + DNE++S+ SK
Sbjct: 80  DRASKKQSVDTNYDIGNSGENDNELSSSTSK 110


>09_06_0015 -
           20234231-20234344,20234846-20234902,20234968-20235111,
           20235581-20235745,20235817-20236005,20236086-20236326,
           20236412-20236512,20236704-20237241,20238101-20238132,
           20238677-20238760
          Length = 554

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 14/47 (29%), Positives = 21/47 (44%)
 Frame = -3

Query: 257 EVKIDNEITSTASKTSDCRNIIDHESCFANEFKGTIPTNSDGDTSSS 117
           EVK  N  T  + +     ++  HES +  E +G I  + D D   S
Sbjct: 117 EVKDSNPQTGPSGQAPIIEDVTGHESSYGPEVRGAIVIDDDDDEQPS 163


>06_03_0051 - 16023915-16023944,16024025-16024680,16024808-16025300
          Length = 392

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 12/43 (27%), Positives = 25/43 (58%)
 Frame = -3

Query: 554 VSHVQTAEELFKSITGFNEVDVNLLEGVHTTYNSLACRFEIAP 426
           V+H+QTA E++ +++ F++   N+ E     +     +FE+ P
Sbjct: 82  VAHLQTAHEIWVALSNFHQGTNNIKELRRDLFKKEYIKFEMKP 124


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,912,067
Number of Sequences: 37544
Number of extensions: 278230
Number of successful extensions: 683
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 661
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 683
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1780264028
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)