Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc15m01
         (697 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY071312-1|AAL48934.1|  603|Drosophila melanogaster RE33807p pro...   125   7e-29
AE014134-794|AAF50965.1|  603|Drosophila melanogaster CG3008-PA ...   125   7e-29
AY051711-1|AAK93135.1|  585|Drosophila melanogaster LD24837p pro...    65   1e-10
AE014296-1997|AAN11879.1|  585|Drosophila melanogaster CG11660-P...    65   1e-10
AE014296-1996|AAF50033.1|  585|Drosophila melanogaster CG11660-P...    65   1e-10

>AY071312-1|AAL48934.1|  603|Drosophila melanogaster RE33807p
           protein.
          Length = 603

 Score =  125 bits (301), Expect = 7e-29
 Identities = 59/113 (52%), Positives = 80/113 (70%), Gaps = 6/113 (5%)
 Frame = -3

Query: 695 SEYNILWWDNKCWFIDVSQSVQPDHPNGLEFLLRDCRNVVNFFEKKGVSHVQTAEELFKS 516
           SEYNILW++ KCWFIDV+QSV+P HP+ LEFL+RDC N+VNFFE++G+ ++ T E+LF+ 
Sbjct: 443 SEYNILWFEGKCWFIDVAQSVEPKHPSALEFLMRDCGNIVNFFERRGLPNIYTKEQLFEF 502

Query: 515 ITGFN-EVDVNL-LEGVHTTYNSL----ACRFEIAPDDNRNVSYPFEYCWQKT 375
           ITG N EV     LE +HT   S+    A   E  PD+ + + YPFE  W+K+
Sbjct: 503 ITGLNSEVHTAAQLEQIHTRGASISQATAPNQEECPDELKPLEYPFELAWEKS 555


>AE014134-794|AAF50965.1|  603|Drosophila melanogaster CG3008-PA
           protein.
          Length = 603

 Score =  125 bits (301), Expect = 7e-29
 Identities = 59/113 (52%), Positives = 80/113 (70%), Gaps = 6/113 (5%)
 Frame = -3

Query: 695 SEYNILWWDNKCWFIDVSQSVQPDHPNGLEFLLRDCRNVVNFFEKKGVSHVQTAEELFKS 516
           SEYNILW++ KCWFIDV+QSV+P HP+ LEFL+RDC N+VNFFE++G+ ++ T E+LF+ 
Sbjct: 443 SEYNILWFEGKCWFIDVAQSVEPKHPSALEFLMRDCGNIVNFFERRGLPNIYTKEQLFEF 502

Query: 515 ITGFN-EVDVNL-LEGVHTTYNSL----ACRFEIAPDDNRNVSYPFEYCWQKT 375
           ITG N EV     LE +HT   S+    A   E  PD+ + + YPFE  W+K+
Sbjct: 503 ITGLNSEVHTAAQLEQIHTRGASISQATAPNQEECPDELKPLEYPFELAWEKS 555


>AY051711-1|AAK93135.1|  585|Drosophila melanogaster LD24837p
           protein.
          Length = 585

 Score = 64.9 bits (151), Expect = 1e-10
 Identities = 31/62 (50%), Positives = 41/62 (66%)
 Frame = -3

Query: 695 SEYNILWWDNKCWFIDVSQSVQPDHPNGLEFLLRDCRNVVNFFEKKGVSHVQTAEELFKS 516
           SE+NIL  D +   IDVSQSV+ DHP+  +FL +DC N+  FF K+ V+   T +ELF  
Sbjct: 350 SEFNILLQDGQLVIIDVSQSVEHDHPHSFDFLRKDCTNISEFFRKRAVA-TMTVKELFDF 408

Query: 515 IT 510
           IT
Sbjct: 409 IT 410


>AE014296-1997|AAN11879.1|  585|Drosophila melanogaster CG11660-PB,
           isoform B protein.
          Length = 585

 Score = 64.9 bits (151), Expect = 1e-10
 Identities = 31/62 (50%), Positives = 41/62 (66%)
 Frame = -3

Query: 695 SEYNILWWDNKCWFIDVSQSVQPDHPNGLEFLLRDCRNVVNFFEKKGVSHVQTAEELFKS 516
           SE+NIL  D +   IDVSQSV+ DHP+  +FL +DC N+  FF K+ V+   T +ELF  
Sbjct: 350 SEFNILLQDGQLVIIDVSQSVEHDHPHSFDFLRKDCTNISEFFRKRAVA-TMTVKELFDF 408

Query: 515 IT 510
           IT
Sbjct: 409 IT 410


>AE014296-1996|AAF50033.1|  585|Drosophila melanogaster CG11660-PA,
           isoform A protein.
          Length = 585

 Score = 64.9 bits (151), Expect = 1e-10
 Identities = 31/62 (50%), Positives = 41/62 (66%)
 Frame = -3

Query: 695 SEYNILWWDNKCWFIDVSQSVQPDHPNGLEFLLRDCRNVVNFFEKKGVSHVQTAEELFKS 516
           SE+NIL  D +   IDVSQSV+ DHP+  +FL +DC N+  FF K+ V+   T +ELF  
Sbjct: 350 SEFNILLQDGQLVIIDVSQSVEHDHPHSFDFLRKDCTNISEFFRKRAVA-TMTVKELFDF 408

Query: 515 IT 510
           IT
Sbjct: 409 IT 410


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 27,536,357
Number of Sequences: 53049
Number of extensions: 508333
Number of successful extensions: 1247
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1208
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1245
length of database: 24,988,368
effective HSP length: 83
effective length of database: 20,585,301
effective search space used: 3046624548
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)