Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc15m01
         (697 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF067624-5|AAC17564.4|  506|Caenorhabditis elegans Hypothetical ...    67   1e-11
Z22181-2|CAA80180.1|  510|Caenorhabditis elegans Hypothetical pr...    59   3e-09
AL132877-9|CAC70109.2|  529|Caenorhabditis elegans Hypothetical ...    32   0.34 
AL110484-28|CAB54395.2|  419|Caenorhabditis elegans Hypothetical...    30   1.8  
Z83317-3|CAB05897.1|  217|Caenorhabditis elegans Hypothetical pr...    28   7.3  

>AF067624-5|AAC17564.4|  506|Caenorhabditis elegans Hypothetical
           protein M01B12.5a protein.
          Length = 506

 Score = 66.9 bits (156), Expect = 1e-11
 Identities = 33/61 (54%), Positives = 40/61 (65%)
 Frame = -3

Query: 695 SEYNILWWDNKCWFIDVSQSVQPDHPNGLEFLLRDCRNVVNFFEKKGVSHVQTAEELFKS 516
           SE+N+L  D K W IDVSQSV+ DHP+ LEFL  DC NV  FF + GV  V +   LF+ 
Sbjct: 287 SEFNMLVHDGKLWIIDVSQSVEQDHPHALEFLRMDCNNVNKFFRELGVP-VLSVRRLFEV 345

Query: 515 I 513
           I
Sbjct: 346 I 346


>Z22181-2|CAA80180.1|  510|Caenorhabditis elegans Hypothetical
           protein ZK632.3 protein.
          Length = 510

 Score = 59.3 bits (137), Expect = 3e-09
 Identities = 29/69 (42%), Positives = 43/69 (62%), Gaps = 1/69 (1%)
 Frame = -3

Query: 695 SEYNILWW-DNKCWFIDVSQSVQPDHPNGLEFLLRDCRNVVNFFEKKGVSHVQTAEELFK 519
           SE+N+L   DNK   IDVSQ++   HP  L+FL RD +N++ FF + G  ++ T  +LF 
Sbjct: 390 SEFNLLLTPDNKVHVIDVSQAMDLSHPRSLQFLTRDIQNIITFFTRIGTPNLPTYVQLFN 449

Query: 518 SITGFNEVD 492
            IT  + V+
Sbjct: 450 LITDLDMVE 458


>AL132877-9|CAC70109.2|  529|Caenorhabditis elegans Hypothetical
           protein Y105E8B.3 protein.
          Length = 529

 Score = 32.3 bits (70), Expect = 0.34
 Identities = 17/47 (36%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
 Frame = -3

Query: 695 SEYNILWW-DNKCWFIDVSQSVQPDHPNGLEFLLRDCRNVVNFFEKK 558
           +E+N++   D +   ID  Q V  DHPN   +  RD   V  FF++K
Sbjct: 230 NEFNLIMLEDERIVMIDFPQMVSIDHPNAEYYFDRDVTCVRTFFKRK 276


>AL110484-28|CAB54395.2|  419|Caenorhabditis elegans Hypothetical
           protein Y38E10A.4 protein.
          Length = 419

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 15/54 (27%), Positives = 27/54 (50%)
 Frame = -3

Query: 539 TAEELFKSITGFNEVDVNLLEGVHTTYNSLACRFEIAPDDNRNVSYPFEYCWQK 378
           T+  +  S +GFNE  +NL+    +T N++   F     ++ N+ Y F   + K
Sbjct: 365 TSSPMLGSFSGFNETPINLV----STGNTMLVTFRSGNSEDSNIRYGFSATFSK 414


>Z83317-3|CAB05897.1|  217|Caenorhabditis elegans Hypothetical
           protein F13G11.2 protein.
          Length = 217

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 21/62 (33%), Positives = 31/62 (50%), Gaps = 1/62 (1%)
 Frame = -3

Query: 599 LRDCRNVVNFFEKKGVSHVQTAEELFKSITGFNEVD-VNLLEGVHTTYNSLACRFEIAPD 423
           LRD R  V++ +   +    T  E    I+G  E+D VNL E  H  Y+ L+C   + P+
Sbjct: 117 LRDMRGFVDWNKDVKI----TGNEFPVFISGNLELDTVNLPEMFHKPYSPLSCEKRLMPN 172

Query: 422 DN 417
            N
Sbjct: 173 YN 174


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,509,602
Number of Sequences: 27780
Number of extensions: 273709
Number of successful extensions: 753
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 725
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 752
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1602927856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)