Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc15l23
         (671 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0650 + 10174905-10175000,10175321-10175376,10175467-101755...    31   0.84 
03_01_0614 + 4515515-4515540,4515988-4516209,4516681-4516768,451...    31   1.1  
02_01_0642 - 4803464-4805665,4806231-4806320                           30   1.5  
07_03_0356 - 17142019-17142899,17145251-17145290,17145381-171455...    29   4.5  
11_01_0334 + 2495275-2495433,2495553-2495661,2496311-2496378,249...    28   5.9  
02_01_0369 + 2649178-2655291,2655773-2656601,2656737-2657425,265...    28   5.9  
06_01_0180 - 1397432-1399969                                           28   7.8  

>03_02_0650 +
           10174905-10175000,10175321-10175376,10175467-10175540,
           10176215-10176753,10176845-10177186,10177520-10177879,
           10177982-10178193,10178881-10179169,10179469-10180152
          Length = 883

 Score = 31.1 bits (67), Expect = 0.84
 Identities = 26/106 (24%), Positives = 47/106 (44%), Gaps = 1/106 (0%)
 Frame = -3

Query: 333 MADIAQDVIAKPNNPQLLHSLAVCALGGEKY-AFLRAQKRSLNRSIKRLGSSDVVFSSDY 157
           +++I+Q  + +  N    +++A   L G K  AFL    +S  +S  +L  +       Y
Sbjct: 487 LSEISQKTLIRGQNYNSGNAVAYALLDGNKQSAFLSTFDKSAFKSSDKLLLAYKPRRGRY 546

Query: 156 VPNAMNVLNKVKETLPRNQYKAKHNKITLLQNLTREQLIRCRAVEH 19
                 V  +  E+LP  +Y       TL+++L  +Q   CR + H
Sbjct: 547 AVYDNEVTMEEAESLPVTEYMLLVRNRTLVESLLLQQAGLCRLLAH 592


>03_01_0614 +
           4515515-4515540,4515988-4516209,4516681-4516768,
           4517084-4517123,4517259-4517305,4517464-4517584,
           4517931-4518091
          Length = 234

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 26/102 (25%), Positives = 43/102 (42%)
 Frame = -3

Query: 507 GVIEELNKKLAFASESLAEANEKIIHFANALVTANAGLVQANTMLNEARRETAQLANRMA 328
           G+I  L  K     + L +  E    F N+L          N + +E R+ET QLA    
Sbjct: 74  GIIARLKDKSVDELQRLLKDKEAYNAFFNSLDQVKT----QNNLRDELRKETVQLARENL 129

Query: 327 DIAQDVIAKPNNPQLLHSLAVCALGGEKYAFLRAQKRSLNRS 202
           +  Q ++   N   ++ +  + A   ++ A L  QK  + RS
Sbjct: 130 EKEQRILELRNQCTIIRTTELAA-AQDRLAELERQKDEIMRS 170


>02_01_0642 - 4803464-4805665,4806231-4806320
          Length = 763

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 15/65 (23%), Positives = 31/65 (47%)
 Frame = -3

Query: 525 KMDTNYGVIEELNKKLAFASESLAEANEKIIHFANALVTANAGLVQANTMLNEARRETAQ 346
           K+++    ++E + +L+     LAE N +++     L +    LVQ  T L +  +    
Sbjct: 475 KVESIQIAVQEKDSELSETQRRLAEVNSEVVELKQLLDSKEDQLVQVRTELQDKEQHIQT 534

Query: 345 LANRM 331
           L N++
Sbjct: 535 LQNKL 539


>07_03_0356 -
           17142019-17142899,17145251-17145290,17145381-17145512,
           17145762-17145815,17145913-17145993,17146860-17146955,
           17147439-17147611,17147750-17147823,17148515-17148622,
           17148693-17148868,17149305-17149352,17150665-17150775,
           17152172-17152226,17153434-17153534,17154176-17154290,
           17155505-17155698
          Length = 812

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 12/47 (25%), Positives = 24/47 (51%)
 Frame = -3

Query: 144 MNVLNKVKETLPRNQYKAKHNKITLLQNLTREQLIRCRAVEHDGTSD 4
           +++LN +KE   R+    K + +T+ +    + L+R  A+  D   D
Sbjct: 498 LDILNSIKEQAVRSSGHQKRHSVTMARLAAEDPLVRDEAILDDDDDD 544


>11_01_0334 +
           2495275-2495433,2495553-2495661,2496311-2496378,
           2496476-2496577,2496853-2497003,2497173-2497222,
           2497432-2497557,2497761-2497863,2498104-2498204,
           2498540-2498677,2498768-2498911,2499028-2499103,
           2499224-2499309,2499432-2499560,2500572-2500674,
           2500776-2500843,2500912-2501013,2501432-2501527,
           2501723-2501848,2502152-2502254,2502427-2502569,
           2503017-2503154,2503248-2503391,2503535-2503610,
           2503883-2503968,2504135-2504212,2505180-2505254,
           2505362-2505496,2506240-2506272,2507886-2507905,
           2508570-2508666,2508899-2509000,2510612-2510725
          Length = 1126

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 18/67 (26%), Positives = 31/67 (46%), Gaps = 1/67 (1%)
 Frame = +1

Query: 52  SSQVLQQRDLVVLGFVLVSRQRFFN-FVKHVHGVGHIVAAKYHVGRTQAFNATVKTALLR 228
           + +V++Q D V L   ++S +  FN F+K    V  + +    VG     N      +  
Sbjct: 366 AQEVMRQEDAVELQKKIMSAKFDFNDFLKQSQNVAKMGSMSRVVGMIPGMNKVTPAQIRE 425

Query: 229 AQKRILF 249
           A+KR+ F
Sbjct: 426 AEKRLAF 432


>02_01_0369 +
           2649178-2655291,2655773-2656601,2656737-2657425,
           2657523-2657649,2657731-2657812,2658172-2658196
          Length = 2621

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 34/142 (23%), Positives = 56/142 (39%), Gaps = 5/142 (3%)
 Frame = -3

Query: 495 ELNKKLAFASESLAEANEKIIHFANALVTANAGLVQANTMLNEARRETAQLANRMADIAQ 316
           EL   L F  E+  E  E+  H  +      + L      L   + E    +NR AD+  
Sbjct: 502 ELTATLTFEKEARKEVEEQREHLCSENKRVLSNLSDLELSLASLKEEMNDGSNRCADLEC 561

Query: 315 DV-IAKPNNPQLLHSLAVCALGGEKY----AFLRAQKRSLNRSIKRLGSSDVVFSSDYVP 151
           ++   K N  + L  LA C    E        L A       +IK+L   ++  S++   
Sbjct: 562 ELRSTKENMERTLVELASCRNSLETLQNDNLELSANSSFEKEAIKKLEEDNLCLSNEKQG 621

Query: 150 NAMNVLNKVKETLPRNQYKAKH 85
             ++ L++ KE L  +  K +H
Sbjct: 622 LLLD-LSETKEELHLSYAKHEH 642


>06_01_0180 - 1397432-1399969
          Length = 845

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 23/85 (27%), Positives = 37/85 (43%), Gaps = 4/85 (4%)
 Frame = -1

Query: 245 SMRFCARKSAVLTVALNAWVRPTWYLAATMCPTP*TCLTKLKKRCLETSTKPSTTRSRCC 66
           ++   A  +A L  A++   RP     A   PTP T   K        ST P TT  +  
Sbjct: 11  ALLLAAAVAAALATAVSGQGRPVTESGAQTAPTPSTFTPKDNFLIDCGSTSPVTTGGKVY 70

Query: 65  KT*LENSSF----DAVQSSMTERQI 3
           KT  +++S     DA++ + T+  +
Sbjct: 71  KTDAQSNSLLSAKDAIKVATTDADV 95


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,383,267
Number of Sequences: 37544
Number of extensions: 375278
Number of successful extensions: 1089
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1055
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1089
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1703141568
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)