Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc15l21
         (673 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC14C4.05c |mug61||Sad1 interacting factor|Schizosaccharomyces...    30   0.35 
SPAC26A3.15c |nsp1||nucleoporin Nsp1|Schizosaccharomyces pombe|c...    26   5.7  
SPBC1683.06c |||uridine ribohydrolase |Schizosaccharomyces pombe...    26   5.7  
SPAC1486.06 |||nicotinate phosphoribosyltransferase |Schizosacch...    25   7.5  

>SPAC14C4.05c |mug61||Sad1 interacting factor|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 844

 Score = 29.9 bits (64), Expect = 0.35
 Identities = 15/44 (34%), Positives = 24/44 (54%), Gaps = 3/44 (6%)
 Frame = +2

Query: 110 GYFGLNADPYDCTAYYICPHKVQMFCESNHEFDLD---SASCKP 232
           G+ G+ A+PY  + YY+ P  ++   ES + F       ASC+P
Sbjct: 487 GFCGVPAEPYPSSLYYLQPGVLRSSIESAYSFAHSLGIEASCQP 530


>SPAC26A3.15c |nsp1||nucleoporin Nsp1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 598

 Score = 25.8 bits (54), Expect = 5.7
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = +3

Query: 537 DKMCHTCSSACVRVTTNPNGAVY 605
           DK  +T SSA    TTNP+G+ +
Sbjct: 119 DKSKNTASSATGAATTNPSGSTF 141


>SPBC1683.06c |||uridine ribohydrolase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 310

 Score = 25.8 bits (54), Expect = 5.7
 Identities = 11/32 (34%), Positives = 19/32 (59%)
 Frame = +3

Query: 429 DIIIKSLA*NLSGPLSVCASMPVTDLVLLASK 524
           D II +L  N  G +++C   P+T++ L  +K
Sbjct: 104 DFIIDTLRNNEPGTITICTIGPLTNIALALNK 135


>SPAC1486.06 |||nicotinate phosphoribosyltransferase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 410

 Score = 25.4 bits (53), Expect = 7.5
 Identities = 10/28 (35%), Positives = 15/28 (53%)
 Frame = +2

Query: 161 CPHKVQMFCESNHEFDLDSASCKPIVYD 244
           CP+  + F E  HEF+ D  +   + YD
Sbjct: 77  CPYLKESFYEFMHEFEFDPENSISLNYD 104


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,572,509
Number of Sequences: 5004
Number of extensions: 52615
Number of successful extensions: 98
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 97
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 98
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 307866294
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)