Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc15l20
         (382 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC839.08c |its8||pig-N |Schizosaccharomyces pombe|chr 2|||Manual     68   6e-13
SPBC11B10.01 |alg2|SPBC32H8.14|mannosyltransferase complex subun...    28   0.57 
SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large subunit|...    26   1.7  
SPAC19A8.09 |||ER to Golgi transport protein Yos1|Schizosaccharo...    26   2.3  
SPAC7D4.04 |taf1||Taz1 interacting factor 1|Schizosaccharomyces ...    25   5.3  
SPAC23H4.14 |vam6|vps39|guanyl-nucleotide exchange factor Vma6|S...    25   5.3  
SPAC26F1.08c |||conserved protein|Schizosaccharomyces pombe|chr ...    24   7.0  
SPCC576.05 |||nucear export factor|Schizosaccharomyces pombe|chr...    24   7.0  
SPAC1F3.07c |rsc58||RSC complex subunit Rsc58|Schizosaccharomyce...    24   7.0  
SPAC17A2.06c |vps8||WD repeat protein Vps8|Schizosaccharomyces p...    24   9.3  
SPAC1639.02c |trk2|SPAC1F5.12|potassium ion transporter Trk2|Sch...    24   9.3  

>SPBC839.08c |its8||pig-N |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 935

 Score = 67.7 bits (158), Expect = 6e-13
 Identities = 38/126 (30%), Positives = 61/126 (48%)
 Frame = -2

Query: 381  FFGTGNIASLNSFELRWVTCFITSFQPFLITTLILMKTLSPFLIVGCAFRAVQFVTKAPL 202
            FFGTGN+ASL++F L  V  FI  F P     L++   L PF+ +  AF  +        
Sbjct: 805  FFGTGNVASLSTFALDSVKRFIPVFNPVTQGALLMYTILVPFIALSAAFGIMNKRLGGIQ 864

Query: 201  GCLNIIVLIYSNIMGLQLLFYVRNNGSWLEIGTSISQFVIVQVITLFIVLINQIAKTMTD 22
                 + +  ++I+ +   + V++ GSW +IG SIS F I   + LFI  +   +  +  
Sbjct: 865  QVTFFLAVGMADIVTINFFYLVKDEGSWKDIGVSISHFCISNFLILFITALEHASAILCK 924

Query: 21   FSIYNL 4
               Y +
Sbjct: 925  NITYTI 930


>SPBC11B10.01 |alg2|SPBC32H8.14|mannosyltransferase complex subunit
           Alg2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 511

 Score = 27.9 bits (59), Expect = 0.57
 Identities = 18/55 (32%), Positives = 25/55 (45%), Gaps = 3/55 (5%)
 Frame = -2

Query: 369 GNIASLNSFELRWVTCFITSFQPFLITTLILMKTLSPF---LIVGCAFRAVQFVT 214
           G +A    F L W TC I +  PF I  L   +T S      ++G    +V F+T
Sbjct: 447 GLLAVFVLFMLFWGTCIIAATVPFAIIKLYFAQTYSSVKLGFMLGTCIVSVSFLT 501


>SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large
           subunit|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1752

 Score = 26.2 bits (55), Expect = 1.7
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = +2

Query: 32  VFAI*FISTMNKVITCTITNCDIEVPISSQLPLF 133
           VF I F+S + K++ C   NC  ++ I S  P F
Sbjct: 92  VFHIGFLSKIKKILECVCWNCG-KLKIDSSNPKF 124


>SPAC19A8.09 |||ER to Golgi transport protein
           Yos1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 81

 Score = 25.8 bits (54), Expect = 2.3
 Identities = 10/26 (38%), Positives = 18/26 (69%)
 Frame = -2

Query: 234 RAVQFVTKAPLGCLNIIVLIYSNIMG 157
           RA++ V   PL  +N IV++Y+ ++G
Sbjct: 56  RAIRTVMTFPLIAINTIVIVYNLVLG 81


>SPAC7D4.04 |taf1||Taz1 interacting factor 1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 926

 Score = 24.6 bits (51), Expect = 5.3
 Identities = 11/45 (24%), Positives = 24/45 (53%)
 Frame = +2

Query: 236 KAQPTIKNGDNVFIKIKVVIKNG*NDVIKQVTHLNSNEFNDAIFP 370
           K  P+IK GD+ +  ++ V ++  N +++++  + S      I P
Sbjct: 241 KEVPSIKEGDDAYYHLRSVAQDAAN-ILQEILKIESTSTTSQIKP 284


>SPAC23H4.14 |vam6|vps39|guanyl-nucleotide exchange factor
           Vma6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 905

 Score = 24.6 bits (51), Expect = 5.3
 Identities = 18/70 (25%), Positives = 32/70 (45%)
 Frame = +2

Query: 161 IMFEYIRTIIFKQPSGALVTNCTALKAQPTIKNGDNVFIKIKVVIKNG*NDVIKQVTHLN 340
           ++F+Y R  + + P  ++V          TI  G  V +K    I    + +  +   L+
Sbjct: 593 LIFKYSRVPLSEDPQNSIVIFIDENSEASTISKG--VVLKYLETISYKVSIIYLEKLLLD 650

Query: 341 SNEFNDAIFP 370
            N+FND +FP
Sbjct: 651 -NKFNDTVFP 659


>SPAC26F1.08c |||conserved protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 977

 Score = 24.2 bits (50), Expect = 7.0
 Identities = 18/84 (21%), Positives = 37/84 (44%), Gaps = 2/84 (2%)
 Frame = -2

Query: 327 TCFITSFQPFLITTLILMKTLSPFLIVGCAFRAVQFVTKAPLGCLNIIVLIYSNIMGLQL 148
           T F  +F P L  + +   T+SPF +    F     V    +G   ++ ++    +  ++
Sbjct: 687 TVFNITFPPILYGSYLKTSTISPFHLACIRF----IVVNVGIGMAIVVNIVVFPYLARRV 742

Query: 147 LFYVRNNGSWLEIG--TSISQFVI 82
           L Y     S L +   T++S +++
Sbjct: 743 LKYKLGQASLLSLKQYTTLSDYLL 766


>SPCC576.05 |||nucear export factor|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1024

 Score = 24.2 bits (50), Expect = 7.0
 Identities = 12/43 (27%), Positives = 21/43 (48%)
 Frame = -1

Query: 367 KYSIIEFIRIEMGDLFYNIVSTIFDYHFDLDENIVTIFNRRLC 239
           K+S+ E  +       YN+ +    YH D+ +N+  +   RLC
Sbjct: 774 KFSLKETNKTSFWHSSYNLFNR--QYHVDMPDNVSDLPQTRLC 814


>SPAC1F3.07c |rsc58||RSC complex subunit Rsc58|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 403

 Score = 24.2 bits (50), Expect = 7.0
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = +2

Query: 176 IRTIIFKQPSGALVTNCTALKAQPTIK 256
           I + I   P+G LV NCTA   + T++
Sbjct: 9   ILSYISSAPAGNLVLNCTATTNKQTLE 35


>SPAC17A2.06c |vps8||WD repeat protein Vps8|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1272

 Score = 23.8 bits (49), Expect = 9.3
 Identities = 9/26 (34%), Positives = 15/26 (57%)
 Frame = +2

Query: 191 FKQPSGALVTNCTALKAQPTIKNGDN 268
           FK P+G + + C +  +    KNG+N
Sbjct: 288 FKYPAGIVSSACHSFSSSIVHKNGEN 313


>SPAC1639.02c |trk2|SPAC1F5.12|potassium ion transporter
           Trk2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 880

 Score = 23.8 bits (49), Expect = 9.3
 Identities = 11/42 (26%), Positives = 23/42 (54%)
 Frame = -2

Query: 378 FGTGNIASLNSFELRWVTCFITSFQPFLITTLILMKTLSPFL 253
           +G+GN+  +++  L   +C  T  QP  +T + + + L+  L
Sbjct: 46  YGSGNLRYIDALLLASGSCTQTGLQPVDLTQISIYQQLTILL 87


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,689,000
Number of Sequences: 5004
Number of extensions: 35118
Number of successful extensions: 91
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 89
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 90
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 124270298
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)