Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc15l20
(382 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
EF625896-1|ABR45903.1| 683|Apis mellifera hexamerin protein. 23 1.2
AY601637-1|AAT11850.1| 683|Apis mellifera hexamerin 70b protein. 23 1.2
AF134821-1|AAD40236.1| 226|Apis mellifera hexamerin protein. 23 1.2
DQ071552-1|AAY82248.1| 495|Apis mellifera anarchy 1 protein. 22 2.1
DQ325126-1|ABD14140.1| 174|Apis mellifera complementary sex det... 21 4.9
AM076717-1|CAJ28210.1| 501|Apis mellifera serotonin receptor pr... 21 4.9
DQ869053-1|ABJ09600.1| 459|Apis mellifera capa-like receptor pr... 20 8.5
DQ667193-1|ABG75745.1| 510|Apis mellifera cys-loop ligand-gated... 20 8.5
DQ201783-1|ABB05503.1| 381|Apis mellifera capa receptor-like GP... 20 8.5
DQ058012-1|AAY57281.1| 373|Apis mellifera venom allergen acid p... 20 8.5
AY939855-1|AAX33235.1| 388|Apis mellifera venom acid phosphatas... 20 8.5
AY898652-1|AAX83121.1| 349|Apis mellifera AKH receptor protein. 20 8.5
>EF625896-1|ABR45903.1| 683|Apis mellifera hexamerin protein.
Length = 683
Score = 23.0 bits (47), Expect = 1.2
Identities = 8/20 (40%), Positives = 13/20 (65%)
Frame = -1
Query: 325 LFYNIVSTIFDYHFDLDENI 266
+F++I TI DY+ EN+
Sbjct: 416 VFFSIYKTILDYYHKYKENL 435
>AY601637-1|AAT11850.1| 683|Apis mellifera hexamerin 70b protein.
Length = 683
Score = 23.0 bits (47), Expect = 1.2
Identities = 8/20 (40%), Positives = 13/20 (65%)
Frame = -1
Query: 325 LFYNIVSTIFDYHFDLDENI 266
+F++I TI DY+ EN+
Sbjct: 416 VFFSIYKTILDYYHKYKENL 435
>AF134821-1|AAD40236.1| 226|Apis mellifera hexamerin protein.
Length = 226
Score = 23.0 bits (47), Expect = 1.2
Identities = 8/20 (40%), Positives = 13/20 (65%)
Frame = -1
Query: 325 LFYNIVSTIFDYHFDLDENI 266
+F++I TI DY+ EN+
Sbjct: 42 VFFSIYKTILDYYHKYKENL 61
>DQ071552-1|AAY82248.1| 495|Apis mellifera anarchy 1 protein.
Length = 495
Score = 22.2 bits (45), Expect = 2.1
Identities = 11/37 (29%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
Frame = +2
Query: 83 ITNCDIEVPISSQLPLFRT*NNNWSP-IMFEYIRTII 190
+TN D V I S+ L + NW P +++++ I+
Sbjct: 19 LTNADNSVHILSKYQLITSTTLNWLPRTHYDHLKEIV 55
>DQ325126-1|ABD14140.1| 174|Apis mellifera complementary sex
determiner protein.
Length = 174
Score = 21.0 bits (42), Expect = 4.9
Identities = 11/28 (39%), Positives = 14/28 (50%)
Frame = -2
Query: 144 FYVRNNGSWLEIGTSISQFVIVQVITLF 61
F R GSW+ I I +F + TLF
Sbjct: 123 FPPRPMGSWISIQEQIPRFRHIGPSTLF 150
>AM076717-1|CAJ28210.1| 501|Apis mellifera serotonin receptor
protein.
Length = 501
Score = 21.0 bits (42), Expect = 4.9
Identities = 7/25 (28%), Positives = 17/25 (68%), Gaps = 1/25 (4%)
Frame = -1
Query: 127 WELAGNWNFNITVRNR-TSYNLVHC 56
+E++GNW+F + + S++++ C
Sbjct: 101 YEISGNWSFGTIMCDLWVSFDVLSC 125
>DQ869053-1|ABJ09600.1| 459|Apis mellifera capa-like receptor
protein.
Length = 459
Score = 20.2 bits (40), Expect = 8.5
Identities = 7/24 (29%), Positives = 15/24 (62%)
Frame = -2
Query: 75 VITLFIVLINQIAKTMTDFSIYNL 4
+IT ++ N +T T++ ++NL
Sbjct: 52 IITCIVIWRNPSMQTPTNYYLFNL 75
>DQ667193-1|ABG75745.1| 510|Apis mellifera cys-loop ligand-gated
ion channel subunit protein.
Length = 510
Score = 20.2 bits (40), Expect = 8.5
Identities = 6/18 (33%), Positives = 12/18 (66%)
Frame = +1
Query: 178 KNYYIQTAKWCLSDKLYG 231
K Y+Q+ C++ +L+G
Sbjct: 184 KCIYVQSINLCMAGRLFG 201
>DQ201783-1|ABB05503.1| 381|Apis mellifera capa receptor-like GPCR
protein.
Length = 381
Score = 20.2 bits (40), Expect = 8.5
Identities = 9/34 (26%), Positives = 15/34 (44%)
Frame = +2
Query: 176 IRTIIFKQPSGALVTNCTALKAQPTIKNGDNVFI 277
I IIF +T CT + P ++ N ++
Sbjct: 46 IYMIIFVTGIFGNITTCTVIIKNPAMQTATNYYL 79
>DQ058012-1|AAY57281.1| 373|Apis mellifera venom allergen acid
phosphatase protein.
Length = 373
Score = 20.2 bits (40), Expect = 8.5
Identities = 6/11 (54%), Positives = 8/11 (72%)
Frame = +2
Query: 149 NWSPIMFEYIR 181
NW PI +Y+R
Sbjct: 108 NWQPIATKYLR 118
>AY939855-1|AAX33235.1| 388|Apis mellifera venom acid phosphatase
precursor protein.
Length = 388
Score = 20.2 bits (40), Expect = 8.5
Identities = 6/11 (54%), Positives = 8/11 (72%)
Frame = +2
Query: 149 NWSPIMFEYIR 181
NW PI +Y+R
Sbjct: 123 NWQPIATKYLR 133
>AY898652-1|AAX83121.1| 349|Apis mellifera AKH receptor protein.
Length = 349
Score = 20.2 bits (40), Expect = 8.5
Identities = 9/40 (22%), Positives = 21/40 (52%)
Frame = -2
Query: 231 AVQFVTKAPLGCLNIIVLIYSNIMGLQLLFYVRNNGSWLE 112
++ F+T+A + L + V+I + +YV + W++
Sbjct: 247 SIGFLTRAKIRTLKMTVIIIAVFFICWTPYYVMSLWYWID 286
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 116,115
Number of Sequences: 438
Number of extensions: 2796
Number of successful extensions: 12
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used: 9300375
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)
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