Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc15l17
(703 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC3C7.01c ||SPAC732.03c|inositol polyphosphate phosphatase |Sc... 29 0.49
SPBC1921.05 |ape2||aminopeptidase Ape2|Schizosaccharomyces pombe... 29 0.85
SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces... 28 1.1
SPBC1734.08 |hse1||STAM like protein Hse1|Schizosaccharomyces po... 27 2.6
SPCC4B3.03c |||DUF21 domain protein|Schizosaccharomyces pombe|ch... 27 2.6
SPBC1709.02c |vas2|SPBC1734.18c|valine-tRNA ligase Vas2 |Schizos... 27 2.6
SPBC29A3.14c |trt1||telomerase reverse transcriptase 1 protein T... 27 2.6
SPCC1223.12c |meu10||GPI anchored cell surface protein |Schizosa... 26 4.5
SPAC1071.11 |||NADH-dependent flavin oxidoreductase |Schizosacch... 26 6.0
SPAC26H5.05 |||IPT/TIG ankyrin repeat protein|Schizosaccharomyce... 26 6.0
SPBC651.09c |||RNA polymerase II associated Paf1 complex |Schizo... 25 7.9
>SPAC3C7.01c ||SPAC732.03c|inositol polyphosphate phosphatase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 611
Score = 29.5 bits (63), Expect = 0.49
Identities = 16/60 (26%), Positives = 30/60 (50%)
Frame = -1
Query: 331 RHKFWLHTALDVVCDNLQFLKSRFNDRDIIKNCQLVLYPVTEIEQYITKLLDIRDNKEIH 152
R K + + L CD L + +I + + ++P+T + T LL+I+D +E+H
Sbjct: 56 RLKIYKYVVLVTSCD----LHAAILGNNIYRARKFAIFPITRTLPFSTGLLNIKDEEELH 111
>SPBC1921.05 |ape2||aminopeptidase Ape2|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 882
Score = 28.7 bits (61), Expect = 0.85
Identities = 17/49 (34%), Positives = 27/49 (55%)
Frame = -1
Query: 289 DNLQFLKSRFNDRDIIKNCQLVLYPVTEIEQYITKLLDIRDNKEIHSQD 143
D L + ++ ND + +C L + VTE E+YI K LD+ + + QD
Sbjct: 728 DQLLEIYTKTNDPYVRNSC-LRAFGVTEDEKYIQKTLDLTLDPIVKEQD 775
>SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 609
Score = 28.3 bits (60), Expect = 1.1
Identities = 14/35 (40%), Positives = 19/35 (54%)
Frame = -1
Query: 301 DVVCDNLQFLKSRFNDRDIIKNCQLVLYPVTEIEQ 197
D + N Q L+ F+ IK+C L YP TEI +
Sbjct: 428 DNIVGNTQQLEELFSKFGRIKSCTLASYPSTEISK 462
>SPBC1734.08 |hse1||STAM like protein Hse1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 373
Score = 27.1 bits (57), Expect = 2.6
Identities = 16/63 (25%), Positives = 27/63 (42%)
Frame = -1
Query: 319 WLHTALDVVCDNLQFLKSRFNDRDIIKNCQLVLYPVTEIEQYITKLLDIRDNKEIHSQDR 140
+L+ LD N+Q L D I+KNC+ + + LL I + H++ R
Sbjct: 50 FLNKRLDTANANIQLLALTLTDA-IVKNCKTSIVREISSRTFTDSLLKIASDSTTHNRVR 108
Query: 139 GNM 131
+
Sbjct: 109 SRI 111
>SPCC4B3.03c |||DUF21 domain protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 679
Score = 27.1 bits (57), Expect = 2.6
Identities = 14/52 (26%), Positives = 25/52 (48%)
Frame = -1
Query: 457 GNKVCGRDIAILISSSLNREGFDHNKEISESERLKEVLQQLRRHKFWLHTAL 302
G G I ++ L+ + + + + SE ++VL+ LRR K W+ L
Sbjct: 76 GGVFAGLTIGLMGCDDLHLQVLEQSGDASERVHARKVLKLLRRGKHWVLVTL 127
>SPBC1709.02c |vas2|SPBC1734.18c|valine-tRNA ligase Vas2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 980
Score = 27.1 bits (57), Expect = 2.6
Identities = 22/97 (22%), Positives = 43/97 (44%), Gaps = 4/97 (4%)
Frame = -1
Query: 544 KIQAAKKQCYSLNHL--ISSSKVFNNYISNFGNKVCGRDIAI--LISSSLNREGFDHNKE 377
+++ +K C L + + ++ +N++ N + G + + I LN NK
Sbjct: 732 RVEGYRKFCNKLYNATKFALGRLGSNFVPNKTADLTGNESLVEKWIFHRLNIAAAAMNKN 791
Query: 376 ISESERLKEVLQQLRRHKFWLHTALDVVCDNLQFLKS 266
+ E L+ H+FWL+ DV +N ++L S
Sbjct: 792 MEEMNFLQATSAV---HQFWLYELCDVYIENSKYLLS 825
>SPBC29A3.14c |trt1||telomerase reverse transcriptase 1 protein Trt1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 988
Score = 27.1 bits (57), Expect = 2.6
Identities = 16/58 (27%), Positives = 29/58 (50%)
Frame = -1
Query: 643 KELASLKEYQVLSTNPRVLSMVVHKKKMLSRLSKIQAAKKQCYSLNHLISSSKVFNNY 470
++ + +QV + +V+ +V + RL K+ +Q H IS SKV+N+Y
Sbjct: 265 RQFGLINAFQVKQLH-KVIPLVSQSTVVPKRLLKVYPLIEQTAKRLHRISLSKVYNHY 321
>SPCC1223.12c |meu10||GPI anchored cell surface protein
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 416
Score = 26.2 bits (55), Expect = 4.5
Identities = 10/28 (35%), Positives = 16/28 (57%)
Frame = -1
Query: 307 ALDVVCDNLQFLKSRFNDRDIIKNCQLV 224
A VC +++ ND D++ NCQ+V
Sbjct: 23 ATPAVCGAPEYIIETQNDLDVLSNCQVV 50
>SPAC1071.11 |||NADH-dependent flavin oxidoreductase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 244
Score = 25.8 bits (54), Expect = 6.0
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = +1
Query: 85 ESVHQLAFHNSNYCNTYFLGPV 150
ES L ++N NYC+T L P+
Sbjct: 217 ESSSGLVYYNRNYCSTSPLSPI 238
>SPAC26H5.05 |||IPT/TIG ankyrin repeat protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1151
Score = 25.8 bits (54), Expect = 6.0
Identities = 11/39 (28%), Positives = 19/39 (48%)
Frame = -1
Query: 574 HKKKMLSRLSKIQAAKKQCYSLNHLISSSKVFNNYISNF 458
HK + L++ K + Q NH++S S N ++ F
Sbjct: 451 HKSRNLTKSEKTGKSNSQQAPSNHVLSKSNTVPNLVTGF 489
>SPBC651.09c |||RNA polymerase II associated Paf1 complex
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 560
Score = 25.4 bits (53), Expect = 7.9
Identities = 16/45 (35%), Positives = 29/45 (64%)
Frame = -1
Query: 658 VRERLKELASLKEYQVLSTNPRVLSMVVHKKKMLSRLSKIQAAKK 524
V+ +L +L + +Y VLS + +S ++++KK LSR+ AA+K
Sbjct: 333 VQRKLNDLRDMSKY-VLSE--KEVSDIINRKKELSRVPSNIAAEK 374
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,548,996
Number of Sequences: 5004
Number of extensions: 47957
Number of successful extensions: 145
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 143
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 145
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 325165428
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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