Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc15l17
(703 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_04_0312 - 20123892-20124085,20124183-20124508,20124728-201247... 30 1.5
04_04_0426 + 25125590-25125670,25126171-25126256,25126423-251264... 30 1.5
11_06_0487 + 24165988-24166362,24166483-24167019,24167114-24167740 30 2.0
11_06_0488 + 24185248-24185622,24185741-24186277,24186371-24186997 29 2.7
07_02_0028 + 11964941-11964991,11965259-11966101,11966249-119665... 29 2.7
02_04_0598 + 24216556-24216636,24217871-24217956,24218083-24218251 29 3.6
01_01_1159 + 9224331-9224473,9224586-9224727,9225412-9225483,922... 29 3.6
11_06_0021 + 19314211-19314311,19315202-19315307,19317135-193174... 29 4.7
09_06_0076 + 20710482-20710670,20711313-20711547,20711664-207116... 28 6.2
05_04_0331 + 20317482-20318174,20318518-20318685,20318773-203188... 28 8.3
02_01_0642 - 4803464-4805665,4806231-4806320 28 8.3
01_06_0033 + 25765300-25765758 28 8.3
01_04_0019 - 15134494-15135863,15135966-15136083,15136226-151362... 28 8.3
01_01_0092 + 722744-723459,723542-723711,723792-724885 28 8.3
>05_04_0312 -
20123892-20124085,20124183-20124508,20124728-20124732,
20125063-20125670,20125744-20125884,20126067-20126194,
20126288-20126329,20126613-20126755
Length = 528
Score = 30.3 bits (65), Expect = 1.5
Identities = 16/53 (30%), Positives = 28/53 (52%)
Frame = -1
Query: 526 KQCYSLNHLISSSKVFNNYISNFGNKVCGRDIAILISSSLNREGFDHNKEISE 368
K C+ ++ +I +K+ N++ISN + C D I NR+ + EI+E
Sbjct: 330 KDCHWISEVIGDAKMINDFISNHSMRRCYAD--SWIDEGANRQPPHSDAEINE 380
>04_04_0426 +
25125590-25125670,25126171-25126256,25126423-25126471,
25126547-25126675,25126973-25127055,25127791-25127959,
25128038-25128103
Length = 220
Score = 30.3 bits (65), Expect = 1.5
Identities = 19/33 (57%), Positives = 21/33 (63%), Gaps = 7/33 (21%)
Frame = -1
Query: 331 RHKFWLHTALDVVCD-----NLQFLKS--RFND 254
+H+F LH ALDVV D N FLKS RFND
Sbjct: 34 QHQFILHAALDVVQDLAWSTNAMFLKSVDRFND 66
>11_06_0487 + 24165988-24166362,24166483-24167019,24167114-24167740
Length = 512
Score = 29.9 bits (64), Expect = 2.0
Identities = 31/140 (22%), Positives = 67/140 (47%), Gaps = 8/140 (5%)
Frame = -1
Query: 643 KELASLKEYQVLSTNPRVLSMVVHKKKMLSRLSKIQAAK---KQCYSLNHLISSSKVFNN 473
+ L + ++LS RV S +++ + RL + AA ++ +L+ LIS+ +
Sbjct: 137 RNLRKICTVELLSAK-RVQSFRPIREEEVGRLLRAVAAASPARRAVNLSELISAYSADST 195
Query: 472 YISNFGNKVCGRD-IAILISSSLNREGFDHNKEISESERLKEVL----QQLRRHKFWLHT 308
+ G++ RD +L+ + ++ S RL E++ +Q+RRH+ ++
Sbjct: 196 MRALIGSRFKDRDRFLMLLERGVKLFATPSLPDLYPSSRLAELISRRPRQMRRHRDEVYA 255
Query: 307 ALDVVCDNLQFLKSRFNDRD 248
LD++ Q +S +D++
Sbjct: 256 FLDIIIKEHQENRSSSDDQE 275
>11_06_0488 + 24185248-24185622,24185741-24186277,24186371-24186997
Length = 512
Score = 29.5 bits (63), Expect = 2.7
Identities = 31/140 (22%), Positives = 67/140 (47%), Gaps = 8/140 (5%)
Frame = -1
Query: 643 KELASLKEYQVLSTNPRVLSMVVHKKKMLSRLSKIQAAK---KQCYSLNHLISSSKVFNN 473
+ L + ++LS RV S +++ + RL + AA ++ +L+ LIS+ +
Sbjct: 137 RNLRKICTVELLSAK-RVQSFRPIREEEVGRLLRAVAAASPARRAVNLSELISAYSADST 195
Query: 472 YISNFGNKVCGRD-IAILISSSLNREGFDHNKEISESERLKEVL----QQLRRHKFWLHT 308
+ G++ RD +L+ + ++ S RL E++ +Q+RRH+ ++
Sbjct: 196 MRALIGSRFKDRDKFLMLLERGVKLFATPSLPDLYPSSRLAELISRRPRQMRRHRDEVYE 255
Query: 307 ALDVVCDNLQFLKSRFNDRD 248
LD++ Q +S +D++
Sbjct: 256 FLDIIIKEHQENRSSSDDQE 275
>07_02_0028 +
11964941-11964991,11965259-11966101,11966249-11966560,
11966640-11967073,11967500-11967941
Length = 693
Score = 29.5 bits (63), Expect = 2.7
Identities = 20/76 (26%), Positives = 36/76 (47%), Gaps = 2/76 (2%)
Frame = -1
Query: 367 SERLKEVLQQLRRHKFWLHTALDVVCDNLQFLKSRFNDRDIIKNCQL--VLYPVTEIEQY 194
S+ +K++L+ + WL +LD + N +++RF D + +L L P +EQ+
Sbjct: 566 SDDVKKILEDISH---WLEASLDNLVTNCGSIRARFTDIQALLPDELADALTPAVYLEQH 622
Query: 193 ITKLLDIRDNKEIHSQ 146
KL R H +
Sbjct: 623 RFKLEKARQRLTDHRE 638
>02_04_0598 + 24216556-24216636,24217871-24217956,24218083-24218251
Length = 111
Score = 29.1 bits (62), Expect = 3.6
Identities = 19/36 (52%), Positives = 22/36 (61%), Gaps = 7/36 (19%)
Frame = -1
Query: 340 QLRRHKFWLHTALDVVCD-----NLQFLKS--RFND 254
Q +H+F LH ALDVV D N FLKS RF+D
Sbjct: 31 QAYQHQFILHAALDVVQDLAWATNTMFLKSVDRFDD 66
>01_01_1159 +
9224331-9224473,9224586-9224727,9225412-9225483,
9225853-9225933,9226031-9226144,9226770-9226826,
9227209-9227310,9227617-9227767,9227851-9227927,
9228721-9228828,9229684-9229754,9230546-9230687,
9230903-9231001,9231112-9231240,9231445-9231559,
9231786-9231853,9233410-9233523,9233587-9233703,
9234079-9234132,9234221-9234326,9235272-9235402,
9235489-9235557
Length = 753
Score = 29.1 bits (62), Expect = 3.6
Identities = 10/32 (31%), Positives = 19/32 (59%)
Frame = -2
Query: 600 ILEYYQWSFIRKKCYHD*VRYRQRKNNVTVSI 505
++EY +W KK HD + +R+ + +TV +
Sbjct: 338 LVEYVKWLNTDKKSLHDPIAFRKEMDGITVDV 369
>11_06_0021 +
19314211-19314311,19315202-19315307,19317135-19317412,
19318587-19318692,19318812-19319159,19319237-19319313,
19319392-19319516,19319884-19320135,19320314-19320336
Length = 471
Score = 28.7 bits (61), Expect = 4.7
Identities = 21/65 (32%), Positives = 36/65 (55%), Gaps = 2/65 (3%)
Frame = -1
Query: 673 MCPETVRER--LKELASLKEYQVLSTNPRVLSMVVHKKKMLSRLSKIQAAKKQCYSLNHL 500
M PE+ RE +KEL + E + LSTNP + KK+ K +A + + ++++
Sbjct: 350 MAPESKREACLIKELEDILEKEGLSTNPSEKEIKAVKKR------KERAKELEGIDMSNI 403
Query: 499 ISSSK 485
I+SS+
Sbjct: 404 ITSSR 408
>09_06_0076 +
20710482-20710670,20711313-20711547,20711664-20711689,
20712000-20712293,20712603-20712728,20712827-20712896,
20712992-20713182,20713394-20713519,20713878-20714279,
20714364-20714758,20714861-20715315,20715403-20715524,
20715653-20715693,20716026-20716129,20716363-20716576,
20717667-20717780,20718576-20718612
Length = 1046
Score = 28.3 bits (60), Expect = 6.2
Identities = 11/37 (29%), Positives = 26/37 (70%)
Frame = -1
Query: 253 RDIIKNCQLVLYPVTEIEQYITKLLDIRDNKEIHSQD 143
+D++KN + + YP++ E+ I K +I D++E+ +++
Sbjct: 429 KDLVKNSEFISYPISLNEKKIEK--EICDDEEVDAEE 463
>05_04_0331 +
20317482-20318174,20318518-20318685,20318773-20318895,
20319094-20319165,20321217-20321431,20321521-20321593,
20322092-20322568,20322970-20323077,20323184-20323192,
20323193-20323552
Length = 765
Score = 27.9 bits (59), Expect = 8.3
Identities = 16/44 (36%), Positives = 23/44 (52%)
Frame = -1
Query: 454 NKVCGRDIAILISSSLNREGFDHNKEISESERLKEVLQQLRRHK 323
N CG + + I NR+ FD N+E R+K + +LR HK
Sbjct: 424 NWACGFHVLLYIKGFENRDIFDINEEAVFKFRMK-LSVELRHHK 466
>02_01_0642 - 4803464-4805665,4806231-4806320
Length = 763
Score = 27.9 bits (59), Expect = 8.3
Identities = 33/157 (21%), Positives = 68/157 (43%), Gaps = 7/157 (4%)
Frame = -1
Query: 646 LKELASLKEYQVLSTNPRVLSMVVHKKKMLSRLSKIQAAKKQCYSLNHLISSSKVFNNYI 467
LK+L KE Q++ + H + + ++L ++ + Q S+ I+ ++ N
Sbjct: 507 LKQLLDSKEDQLVQVRTELQDKEQHIQTLQNKLDSMKFSCSQAESVVQKIA--ELTGNLA 564
Query: 466 SNFGNKVCGRDIAILISSSLNREG-------FDHNKEISESERLKEVLQQLRRHKFWLHT 308
S+ + DI L+ ++ G HN+ ++ E LKE L Q H
Sbjct: 565 SSVEGEEM--DIYALLDDEISSTGTALKSNLHKHNQLEADIEMLKESLHQKDMDLRAAHE 622
Query: 307 ALDVVCDNLQFLKSRFNDRDIIKNCQLVLYPVTEIEQ 197
ALD L+ + R++ ++ + + L ++I++
Sbjct: 623 ALDAKDQELKAVMRRWDVKEEVDKLEGFLKDPSDIKR 659
>01_06_0033 + 25765300-25765758
Length = 152
Score = 27.9 bits (59), Expect = 8.3
Identities = 20/72 (27%), Positives = 40/72 (55%), Gaps = 3/72 (4%)
Frame = -1
Query: 292 CDNLQFLKSRFNDRD-IIKNCQLVLYPVTEIEQYITKLLDIRDNKE--IHSQDRGNMYYN 122
CD+++ +K+R +DR+ + + Q +++ ++E T L D KE +H R N
Sbjct: 20 CDSVENVKARIHDREGVPPHQQRLIFAGKQLEDGRT-LADYNIQKESTLHLVLRLRRGMN 78
Query: 121 NLNYEKLTGEQI 86
++ + LTG++I
Sbjct: 79 DIKVKMLTGKEI 90
>01_04_0019 -
15134494-15135863,15135966-15136083,15136226-15136278,
15136293-15137271,15138980-15139054
Length = 864
Score = 27.9 bits (59), Expect = 8.3
Identities = 17/45 (37%), Positives = 22/45 (48%), Gaps = 5/45 (11%)
Frame = +2
Query: 425 YCDISTTDFI-----TEIAYVIVKYFTGRDEMIETVTLFFRCLYL 544
+CD STT FI TE Y + +FT + V L + CL L
Sbjct: 338 HCDSSTTYFIIIYIWTEAMYADLGHFTAASIRVAFVGLIYPCLVL 382
>01_01_0092 + 722744-723459,723542-723711,723792-724885
Length = 659
Score = 27.9 bits (59), Expect = 8.3
Identities = 14/36 (38%), Positives = 23/36 (63%), Gaps = 3/36 (8%)
Frame = -1
Query: 184 LLDI---RDNKEIHSQDRGNMYYNNLNYEKLTGEQI 86
LLDI R N+E H+ + ++YY L Y+ LT +++
Sbjct: 541 LLDIAGGRRNREQHTSNSAHLYYPALVYDCLTQQEV 576
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,259,202
Number of Sequences: 37544
Number of extensions: 267529
Number of successful extensions: 844
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 831
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 844
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1803843684
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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