Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc15l17
         (703 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81071-7|CAE11303.1|  313|Caenorhabditis elegans Hypothetical pr...    29   3.2  
Z82288-5|CAB05324.1|  380|Caenorhabditis elegans Hypothetical pr...    28   7.4  
Z77652-4|CAB01117.2|  303|Caenorhabditis elegans Hypothetical pr...    28   7.4  

>Z81071-7|CAE11303.1|  313|Caenorhabditis elegans Hypothetical
           protein F28F8.8 protein.
          Length = 313

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 13/26 (50%), Positives = 19/26 (73%)
 Frame = -3

Query: 305 VGCGLRQFAVSEKSIQRQGHYQKLSA 228
           VGC L+ +  SEK+I + GHY KL++
Sbjct: 81  VGCTLKAYNFSEKTI-KNGHYLKLAS 105


>Z82288-5|CAB05324.1|  380|Caenorhabditis elegans Hypothetical
           protein ZK896.7 protein.
          Length = 380

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 13/35 (37%), Positives = 18/35 (51%)
 Frame = +1

Query: 262 IDFSETANCRRPHPTRCAARTCAFSTAATPLSTSR 366
           I FSE A+CR PH      R  AF +     +T++
Sbjct: 14  IGFSEEASCRHPHERFIGTRCYAFVSKKHTYNTAK 48


>Z77652-4|CAB01117.2|  303|Caenorhabditis elegans Hypothetical
           protein C06B3.7 protein.
          Length = 303

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 15/52 (28%), Positives = 26/52 (50%)
 Frame = -1

Query: 478 NNYISNFGNKVCGRDIAILISSSLNREGFDHNKEISESERLKEVLQQLRRHK 323
           N Y+  F   V  +D+   +  S+N+     N EI +S+R++ + Q    HK
Sbjct: 56  NRYLEKFDRNVMSKDLKPFVMYSMNKR---RNWEIDKSDRVELMGQIQELHK 104


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,961,924
Number of Sequences: 27780
Number of extensions: 262595
Number of successful extensions: 853
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 827
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 853
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1624019012
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)