Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc15l16
(715 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_01_0285 - 2090427-2090558,2091045-2091119,2091334-2091407,209... 203 9e-53
02_05_0884 - 32483735-32483866,32484417-32484491,32484707-324847... 202 2e-52
05_01_0588 + 5278013-5278153,5278641-5278782,5278923-5279019,527... 100 2e-21
09_04_0728 - 19771975-19772093,19772131-19772224,19772322-197725... 45 7e-05
06_01_0539 + 3869156-3869908 45 7e-05
06_01_0529 + 3831100-3831852 45 7e-05
06_01_0479 + 3419657-3420337 44 2e-04
06_01_0387 - 2770387-2770514,2770963-2771063,2771152-2771255,277... 42 5e-04
01_01_0471 - 3467275-3467351,3467526-3467895,3468258-3468555,346... 30 1.6
03_02_0435 - 8406262-8406419,8406499-8406547,8406577-8407458,840... 28 6.4
02_05_0471 - 29306334-29306398,29306579-29306775,29307744-29309665 28 8.5
>06_01_0285 -
2090427-2090558,2091045-2091119,2091334-2091407,
2091792-2091903,2092036-2092108,2092291-2092346,
2092679-2092755,2093384-2093525
Length = 246
Score = 203 bits (496), Expect = 9e-53
Identities = 97/202 (48%), Positives = 133/202 (65%)
Frame = -3
Query: 611 SAPHSTGTSIMACEFDGGVVIGADSRTTTGAYIANRVTDKLTKITDQIYCCRSGSAADTQ 432
S H GT+I+ +DGGVV+ ADSRT+TG Y+ANR +DK+T++TD +Y CRSGSAADTQ
Sbjct: 19 SGEHRMGTTIVGVCYDGGVVLAADSRTSTGMYVANRASDKITQLTDNVYVCRSGSAADTQ 78
Query: 431 AIADIVTYHLNFHKMELGDPPLVETAAAIFRELCYNYRDSLMAGILVAGWDKKKGAQIYS 252
I++ V Y L+ H ++LG P V+ AA + R L Y ++ L AG++V GWDK +G QI+S
Sbjct: 79 VISEYVRYFLHQHTIQLGQPATVKVAANLIRLLAYQNKNMLQAGMIVGGWDKYEGGQIFS 138
Query: 251 IPIGGMVQRQAXXXXXXXXXXXXXXVDANFKPNMTKEEAKKFVTDTLTLAILRDGSSGGV 72
+P+GG + RQ +D +K M++EEA+KFV ++LAI RDG+SGGV
Sbjct: 139 VPLGGTILRQPFAIGGSGSSYLYGLLDHEWKEGMSQEEAEKFVVKVVSLAIARDGASGGV 198
Query: 71 VRLGVITEAGVERSVILGDQLP 6
VR I GV R GD+LP
Sbjct: 199 VRTVTINADGVSRKFHPGDKLP 220
>02_05_0884 -
32483735-32483866,32484417-32484491,32484707-32484780,
32485180-32485291,32485476-32485548,32485674-32485729,
32486046-32486122,32486799-32486940
Length = 246
Score = 202 bits (493), Expect = 2e-52
Identities = 97/201 (48%), Positives = 132/201 (65%)
Frame = -3
Query: 611 SAPHSTGTSIMACEFDGGVVIGADSRTTTGAYIANRVTDKLTKITDQIYCCRSGSAADTQ 432
S H GT+I+ +DGGVV+ ADSRT+TG Y+ANR +DK+T++TD +Y CRSGSAADTQ
Sbjct: 19 SGEHRMGTTIVGVCYDGGVVLAADSRTSTGMYVANRASDKITQLTDNVYICRSGSAADTQ 78
Query: 431 AIADIVTYHLNFHKMELGDPPLVETAAAIFRELCYNYRDSLMAGILVAGWDKKKGAQIYS 252
I+D V Y L+ H ++LG P V+ AA + R L Y ++ L AG++V GWDK +G QI+S
Sbjct: 79 VISDYVRYFLHQHTIQLGQPATVKVAANLIRLLAYQNKNMLQAGMIVGGWDKYEGGQIFS 138
Query: 251 IPIGGMVQRQAXXXXXXXXXXXXXXVDANFKPNMTKEEAKKFVTDTLTLAILRDGSSGGV 72
+P+GG + RQ +D +K M++EEA+KFV ++LAI RDG+SGGV
Sbjct: 139 VPLGGTILRQPFAIGGSGSSYLYGLLDHEWKEGMSQEEAEKFVVKVVSLAIARDGASGGV 198
Query: 71 VRLGVITEAGVERSVILGDQL 9
VR I GV R GD+L
Sbjct: 199 VRTVTINADGVSRKFHPGDKL 219
>05_01_0588 +
5278013-5278153,5278641-5278782,5278923-5279019,
5279130-5279199,5279284-5279388,5279531-5279629,
5280062-5280152,5280238-5280311
Length = 272
Score = 99.5 bits (237), Expect = 2e-21
Identities = 56/197 (28%), Positives = 98/197 (49%)
Frame = -3
Query: 596 TGTSIMACEFDGGVVIGADSRTTTGAYIANRVTDKLTKITDQIYCCRSGSAADTQAIADI 417
TGT+I+ F GVV+GAD+R T G +A++ +K+ + IYCC +G+AADT+A+ D+
Sbjct: 37 TGTTIVGLVFQDGVVLGADTRATEGPIVADKNCEKIHYMAPNIYCCGAGTAADTEAVTDM 96
Query: 416 VTYHLNFHKMELGDPPLVETAAAIFRELCYNYRDSLMAGILVAGWDKKKGAQIYSIPIGG 237
V+ L H+ G V T+ + + ++Y+ + A +++ G D G ++++ G
Sbjct: 97 VSSQLQLHRYATGRESRVVTSLTLLKSHLFSYQGHVSAALVLGGVD-VTGPHLHTVYPHG 155
Query: 236 MVQRQAXXXXXXXXXXXXXXVDANFKPNMTKEEAKKFVTDTLTLAILRDGSSGGVVRLGV 57
++ +K +T+EE + V + + I D SG V + V
Sbjct: 156 STDTLPFATMGSGSLAAMSVFESKYKEGLTREEGIQLVAEAIRGGIFNDLGSGSNVDVCV 215
Query: 56 ITEAGVERSVILGDQLP 6
IT+ E + QLP
Sbjct: 216 ITKGKTE--YLRNHQLP 230
>09_04_0728 -
19771975-19772093,19772131-19772224,19772322-19772507,
19772596-19772767,19772854-19772983,19773060-19773136,
19774109-19774194,19774508-19774585,19775916-19776045,
19776379-19776423,19776508-19776618,19776801-19777057,
19777153-19777302,19777899-19778008,19778426-19778546
Length = 621
Score = 44.8 bits (101), Expect = 7e-05
Identities = 44/195 (22%), Positives = 84/195 (43%), Gaps = 7/195 (3%)
Frame = -3
Query: 605 PHSTGTSIMACEFDGGVVIGADSRTTTGAYIANRVTDKLTKITDQIYCCRSGSAADTQAI 426
P+ TG+SI+A ++ GV++ +D+ + G+ + + +++ + SG +D Q I
Sbjct: 365 PYVTGSSIIALKYKDGVIMASDTGASYGSTLRYKSVERIKAVGKHSLIGASGEFSDFQEI 424
Query: 425 ADIV-TYHLNFHKMELGDPPLVETAAAIFRELCYNYR---DSLMAGILVAGWDK-KKGAQ 261
+ L+ H + G+ + + + YN R D L +++ G K KG +
Sbjct: 425 LRYLDELTLSDHMWDDGNSLGPKEVHSYLTRVMYNRRNKFDPLWNSLVIGGVKKGPKGEE 484
Query: 260 IY--SIPIGGMVQRQAXXXXXXXXXXXXXXVDANFKPNMTKEEAKKFVTDTLTLAILRDG 87
Y + + G + + ++ +MT EEA K V L + + RD
Sbjct: 485 KYLGMVNMIGTHFEENHIATGFGNHMAIPILRTEWREDMTFEEAVKLVEKCLLVLLYRDR 544
Query: 86 SSGGVVRLGVITEAG 42
SS ++ IT G
Sbjct: 545 SSINKFQIAKITTEG 559
>06_01_0539 + 3869156-3869908
Length = 250
Score = 44.8 bits (101), Expect = 7e-05
Identities = 35/165 (21%), Positives = 62/165 (37%), Gaps = 5/165 (3%)
Frame = -3
Query: 614 MSAPHSTGTSIMACEFDGGVVIGADSRTTTGAYIANRVTDKLTKITDQIYCCRSGSAADT 435
M A + G+++ DG V++G + + T+ +R +K+ KI + C +G +D
Sbjct: 25 MEAIGNAGSALGVLAADGVVLVG-EKKVTSKLLQTSRSAEKMYKIDSHLACAVAGIMSDA 83
Query: 434 QAIADIVTYHLNFHKMELGDPPLVETAAAIFRELCYNYRD-----SLMAGILVAGWDKKK 270
+ + H + + +P VE + Y L AGWDK
Sbjct: 84 NILLNTARLHAQRYALSYQEPIPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKHH 143
Query: 269 GAQIYSIPIGGMVQRQAXXXXXXXXXXXXXXVDANFKPNMTKEEA 135
G Q+Y G + +++ MT+EEA
Sbjct: 144 GFQLYMSDPSGNYSGWKAAAVGANSQAAQSMLKQDYRDGMTREEA 188
>06_01_0529 + 3831100-3831852
Length = 250
Score = 44.8 bits (101), Expect = 7e-05
Identities = 35/165 (21%), Positives = 62/165 (37%), Gaps = 5/165 (3%)
Frame = -3
Query: 614 MSAPHSTGTSIMACEFDGGVVIGADSRTTTGAYIANRVTDKLTKITDQIYCCRSGSAADT 435
M A + G+++ DG V++G + + T+ +R +K+ KI + C +G +D
Sbjct: 25 MEAIGNAGSALGVLAADGVVLVG-EKKVTSKLLQTSRSAEKMYKIDSHLACAVAGIMSDA 83
Query: 434 QAIADIVTYHLNFHKMELGDPPLVETAAAIFRELCYNYRD-----SLMAGILVAGWDKKK 270
+ + H + + +P VE + Y L AGWDK
Sbjct: 84 NILLNTARLHAQRYALSYQEPIPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKHH 143
Query: 269 GAQIYSIPIGGMVQRQAXXXXXXXXXXXXXXVDANFKPNMTKEEA 135
G Q+Y G + +++ MT+EEA
Sbjct: 144 GFQLYMSDPSGNYSGWKAAAVGANSQAAQSMLKQDYRDGMTREEA 188
>06_01_0479 + 3419657-3420337
Length = 226
Score = 43.6 bits (98), Expect = 2e-04
Identities = 34/165 (20%), Positives = 62/165 (37%), Gaps = 5/165 (3%)
Frame = -3
Query: 614 MSAPHSTGTSIMACEFDGGVVIGADSRTTTGAYIANRVTDKLTKITDQIYCCRSGSAADT 435
M A + G+++ DG V++G + + T+ +R +K+ KI + C +G +D
Sbjct: 1 MEAIGNAGSALGVLAADGVVLVG-EKKVTSKLLQTSRSAEKMYKIDSHLACAVAGIMSDA 59
Query: 434 QAIADIVTYHLNFHKMELGDPPLVETAAAIFRELCYNYRD-----SLMAGILVAGWDKKK 270
+ + H + + +P VE + Y L AGWDK
Sbjct: 60 NILLNTARLHAQRYALSYQEPIPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKHH 119
Query: 269 GAQIYSIPIGGMVQRQAXXXXXXXXXXXXXXVDANFKPNMTKEEA 135
G Q+Y G + +++ +T+EEA
Sbjct: 120 GFQLYMSDPSGNYSGWKAAAVGANSQAAQSMLKQDYRDGLTREEA 164
>06_01_0387 -
2770387-2770514,2770963-2771063,2771152-2771255,
2771345-2771507,2771550-2771596,2772818-2772946
Length = 223
Score = 41.9 bits (94), Expect = 5e-04
Identities = 27/97 (27%), Positives = 43/97 (44%), Gaps = 1/97 (1%)
Frame = -3
Query: 356 AAAIFRELCYNYRD-SLMAGILVAGWDKKKGAQIYSIPIGGMVQRQAXXXXXXXXXXXXX 180
A+ + + Y+YR L G ++AGWD+K G +Y + G +
Sbjct: 85 ASKLLANILYSYRGMGLSIGTMIAGWDEK-GPGLYYVDSEGARLMGSRFSVGSGSLYAYG 143
Query: 179 XVDANFKPNMTKEEAKKFVTDTLTLAILRDGSSGGVV 69
+D ++ M EEA + + A RDG+SGG V
Sbjct: 144 ILDEGYRYVMPVEEAAELARRAIYQATFRDGASGGCV 180
>01_01_0471 -
3467275-3467351,3467526-3467895,3468258-3468555,
3468680-3469734,3469823-3470467
Length = 814
Score = 30.3 bits (65), Expect = 1.6
Identities = 23/74 (31%), Positives = 33/74 (44%), Gaps = 1/74 (1%)
Frame = -3
Query: 629 CLPEWMSAPHSTGTSIMACEFDGGVVIGADS-RTTTGAYIANRVTDKLTKITDQIYCCRS 453
C P+ +S H G S + D A R T A++ + VTDKLT + + +S
Sbjct: 623 CTPKRISNGHKGGASGGSAISDSEDPFRASQLRYTPRAHLIHSVTDKLTVLAKEAASQKS 682
Query: 452 GSAADTQAIADIVT 411
S +A D VT
Sbjct: 683 CSRGKCRAFVDQVT 696
>03_02_0435 -
8406262-8406419,8406499-8406547,8406577-8407458,
8408976-8409127,8410346-8410616
Length = 503
Score = 28.3 bits (60), Expect = 6.4
Identities = 9/25 (36%), Positives = 18/25 (72%)
Frame = -1
Query: 307 WLVF*LLDGTKRKELKFTLYLLVVW 233
WLV+ L++G + + + F+L + V+W
Sbjct: 294 WLVWFLMEGARSRPIWFSLLIYVIW 318
>02_05_0471 - 29306334-29306398,29306579-29306775,29307744-29309665
Length = 727
Score = 27.9 bits (59), Expect = 8.5
Identities = 13/41 (31%), Positives = 20/41 (48%)
Frame = +3
Query: 39 HTSFSNYSESDNTTRRAVTKDSQCQCVRNKFFGFFLGHIGL 161
H NY E+ ++ + A+ K C + FFG L +GL
Sbjct: 552 HYILGNYGEAYDSFKSAIAKLRTCGEKKTAFFGVALNQMGL 592
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,118,709
Number of Sequences: 37544
Number of extensions: 397844
Number of successful extensions: 1051
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1026
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1047
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1851002996
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -