Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc15l16
         (715 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    22   6.6  
AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein ...    21   8.8  
AF023619-1|AAC39040.1|  355|Apis mellifera arginine kinase protein.    21   8.8  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             21   8.8  

>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 21.8 bits (44), Expect = 6.6
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = -3

Query: 641 YSDPCLPEWMSAPH 600
           +S+ CLPE +  PH
Sbjct: 432 FSESCLPEEILCPH 445


>AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein
           protein.
          Length = 352

 Score = 21.4 bits (43), Expect = 8.8
 Identities = 8/22 (36%), Positives = 14/22 (63%)
 Frame = -2

Query: 540 FPYHNRRLHRQSSHRQADENHG 475
           FP +NR   R +++ Q  ++HG
Sbjct: 80  FPPYNRMDMRNATYYQHQQDHG 101


>AF023619-1|AAC39040.1|  355|Apis mellifera arginine kinase protein.
          Length = 355

 Score = 21.4 bits (43), Expect = 8.8
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = +3

Query: 531 GTGISSNDDSTIKLACHD 584
           G GI  NDD T  + C++
Sbjct: 206 GRGIYHNDDKTFLVWCNE 223


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 21.4 bits (43), Expect = 8.8
 Identities = 9/22 (40%), Positives = 11/22 (50%)
 Frame = -2

Query: 537 PYHNRRLHRQSSHRQADENHGP 472
           P H +  H QS+H QA     P
Sbjct: 809 PPHQQLHHHQSTHPQAQAQAQP 830


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 188,676
Number of Sequences: 438
Number of extensions: 4001
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22048515
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)