Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc15l12
         (699 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC16G5.14c |rps3||40S ribosomal protein S3|Schizosaccharomyces...   279   2e-76
SPAPB1E7.07 |glt1||glutamate synthase Glt1 |Schizosaccharomyces ...    28   1.5  
SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr 2...    27   3.4  
SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces pomb...    26   6.0  
SPAC343.01c |erg8||phosphomevalonate kinase |Schizosaccharomyces...    26   6.0  
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    25   7.9  

>SPBC16G5.14c |rps3||40S ribosomal protein S3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 249

 Score =  279 bits (685), Expect = 2e-76
 Identities = 136/195 (69%), Positives = 159/195 (81%)
 Frame = -1

Query: 639 ELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRRIRELTSVVQKRFNIPEQSVELY 460
           EL+E+GYSG EVRVTP RSEIII AT TQ VLGEKGRRIRELT++VQKRF   E +VELY
Sbjct: 30  ELSEEGYSGCEVRVTPSRSEIIIRATHTQDVLGEKGRRIRELTALVQKRFKFAENTVELY 89

Query: 459 AEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIMESGARGCEVVVSGKLRGQRA 280
           AEKV  RGLCA+AQ ESLRYKL+ GLAVRRA YGVLR++ME+GA+GCEVV+SGKLR  RA
Sbjct: 90  AEKVQNRGLCAVAQCESLRYKLLAGLAVRRAAYGVLRYVMEAGAKGCEVVISGKLRAARA 149

Query: 279 KSMKFVDGLMIHSGDPCNDYVNTATRHVLLRQGVLGIKVKIMLPWDQQGKNGPKKPQPDH 100
           KSMKF DG MIHSG P  D++++ATRHVLLRQGVLG+KVKIMLP   + K   KK  PD 
Sbjct: 150 KSMKFADGFMIHSGQPAVDFIDSATRHVLLRQGVLGVKVKIMLP---EPKTRQKKSLPDI 206

Query: 99  ILVTEPKDEPVPLEP 55
           ++V +PK+E    +P
Sbjct: 207 VVVLDPKEEEPITKP 221



 Score = 34.3 bits (75), Expect = 0.017
 Identities = 15/18 (83%), Positives = 15/18 (83%)
 Frame = -3

Query: 697 RKFVGDGVFKAELNEFLT 644
           RKFV DGVF AELNEF T
Sbjct: 11  RKFVADGVFYAELNEFFT 28


>SPAPB1E7.07 |glt1||glutamate synthase Glt1 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2111

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 15/52 (28%), Positives = 26/52 (50%)
 Frame = -1

Query: 354  LRFIMESGARGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPCNDYVNTATRH 199
            + F ME   +  + ++  +L+     S K  D ++I  GD  ND + T+ RH
Sbjct: 1868 IHFAMEFLHKNTKSLLDSELKDGNYISAKGKDVIVIGGGDTGNDCLGTSVRH 1919


>SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1217

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 19/62 (30%), Positives = 31/62 (50%), Gaps = 1/62 (1%)
 Frame = -1

Query: 570 MATRTQSVLGEKGRRIRELTSVVQKRFNIPEQSVELYAEKVATRGLCAI-AQAESLRYKL 394
           MATR Q       RR  E  + +QK +N  + ++EL  E+V   G   +  + +  RY +
Sbjct: 726 MATRIQRAWRSYVRRRSEAAACIQKLWNRNKVNMEL--ERVRNEGTKLLQGKKQRRRYSI 783

Query: 393 IG 388
           +G
Sbjct: 784 LG 785


>SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 2685

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 9/31 (29%), Positives = 16/31 (51%), Gaps = 1/31 (3%)
 Frame = -3

Query: 289  STCQINEVCR-WTHDPLWRPLQ*LRQHCYQT 200
            + C   + CR W   P W+ +  + Q+C+ T
Sbjct: 1420 TVCNRKKACRLWNFKPHWQVITRIPQYCHDT 1450


>SPAC343.01c |erg8||phosphomevalonate kinase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 426

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 11/61 (18%), Positives = 28/61 (45%)
 Frame = -1

Query: 684 EMGFSRQNSMSSSLGELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRRIRELTSV 505
           +  + + N ++ +LG++ + G       +T +   + +   R     G+K  +I + T V
Sbjct: 135 QTSYPKFNFLNCTLGQVHKTGLGSSAAMITSLIGSLFLSLRRLTDDTGDKSLKIDDSTKV 194

Query: 504 V 502
           +
Sbjct: 195 I 195


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 11/30 (36%), Positives = 20/30 (66%)
 Frame = +3

Query: 603 ALPRRSTRPRPAPLVRNSLSSALKTPSPTN 692
           A+P++ + P+   L+    SS++ TPSPT+
Sbjct: 618 AVPQKPSAPQVTRLMAPQDSSSVVTPSPTS 647


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,911,237
Number of Sequences: 5004
Number of extensions: 62156
Number of successful extensions: 172
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 167
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 172
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 323158234
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)