Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc15l12
(699 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_1220 - 24966169-24966327,24966421-24966552,24966639-249666... 316 8e-87
05_02_0059 + 6230139-6230199,6231716-6232506,6233108-6233149 31 0.88
11_01_0278 - 2068800-2068826,2070001-2070442,2070702-2072047 30 2.0
02_05_0237 + 27095817-27097433 30 2.0
05_04_0322 + 20239793-20240127,20240176-20240728,20241317-202414... 29 2.7
08_01_0892 - 8778097-8778236,8778390-8778486,8778568-8778747,877... 29 3.5
07_01_0214 + 1595917-1596526,1597127-1597140,1598414-1598743,159... 29 3.5
02_01_0137 + 988442-988641,989088-989281,989369-989488,989594-98... 29 3.5
07_03_0670 + 20562188-20562923,20564288-20564826,20564967-205654... 29 4.7
02_05_1123 + 34275272-34275331,34275451-34275523,34275631-342757... 29 4.7
08_02_0478 + 17621678-17623768 28 6.2
02_05_0417 - 28796121-28796743,28796829-28796925,28797010-287970... 28 6.2
01_07_0132 - 41298184-41298558,41298648-41298729,41298850-412989... 28 6.2
08_01_0346 - 3063440-3064189 28 8.2
05_06_0254 - 26706830-26706943,26707063-26707193,26707330-267074... 28 8.2
01_01_0213 + 1833221-1835062,1835429-1835558,1835726-1836411 28 8.2
>07_03_1220 -
24966169-24966327,24966421-24966552,24966639-24966693,
24967496-24967667,24967771-24967918,24968015-24968050
Length = 233
Score = 316 bits (777), Expect = 8e-87
Identities = 158/212 (74%), Positives = 176/212 (83%), Gaps = 1/212 (0%)
Frame = -1
Query: 675 FSRQNSMSSSLGELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRRIRELTSVVQK 496
F+ N M + ELAEDGYSGVEVRVTP+R+EIII ATRTQ+VLGEKGRRIRELTSVVQK
Sbjct: 20 FAELNEMLTR--ELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLGEKGRRIRELTSVVQK 77
Query: 495 RFNIPEQSVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIMESGARGCE 316
RFN PE VELYAEKV RGLCAIAQAESLRYKL+GGLAVRRACYGVLRF+MESGA+GCE
Sbjct: 78 RFNFPENGVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFVMESGAKGCE 137
Query: 315 VVVSGKLRGQRAKSMKFVDGLMIHSGDPCNDYVNTATRHVLLRQGVLGIKVKIMLPWDQQ 136
V+VSGKLR QRAKSMKF DG MI SG P N Y+++A RHVLLRQGVLGIKVKIML WD +
Sbjct: 138 VIVSGKLRAQRAKSMKFKDGYMISSGYPVNLYIDSAVRHVLLRQGVLGIKVKIMLDWDPK 197
Query: 135 GKNGPKKPQPDHILVTEPKDEPVPLEP-TSEV 43
GK GP P PD + + PKDE +P T+E+
Sbjct: 198 GKQGPMTPLPDLVTIHAPKDEDEFSKPLTAEI 229
Score = 33.1 bits (72), Expect = 0.22
Identities = 15/18 (83%), Positives = 15/18 (83%)
Frame = -3
Query: 697 RKFVGDGVFKAELNEFLT 644
RKFV DGVF AELNE LT
Sbjct: 11 RKFVADGVFFAELNEMLT 28
>05_02_0059 + 6230139-6230199,6231716-6232506,6233108-6233149
Length = 297
Score = 31.1 bits (67), Expect = 0.88
Identities = 13/25 (52%), Positives = 18/25 (72%)
Frame = -3
Query: 133 QERPEEATTRPHPGNRAQGRARAPR 59
Q R + +T RP PG R++GR+R PR
Sbjct: 194 QLRSDYSTHRPPPGGRSRGRSRHPR 218
>11_01_0278 - 2068800-2068826,2070001-2070442,2070702-2072047
Length = 604
Score = 29.9 bits (64), Expect = 2.0
Identities = 14/44 (31%), Positives = 22/44 (50%)
Frame = -3
Query: 196 ASQARSTRNQGQNHVAVGPARQERPEEATTRPHPGNRAQGRARA 65
A + S R G++ + P R+E + T RP PG+ + A A
Sbjct: 455 AERTMSLRGGGESAGSDSPCRREEAKSRTPRPQPGSAGERSAAA 498
>02_05_0237 + 27095817-27097433
Length = 538
Score = 29.9 bits (64), Expect = 2.0
Identities = 14/36 (38%), Positives = 20/36 (55%)
Frame = +2
Query: 71 GSSLGSVTRMWSGCGFFGPFLPCWSHGNMILTLIPS 178
G+ L +V R GCG+FG + W G + L+PS
Sbjct: 152 GAHLPAVIRALVGCGWFG--IESWIGGRAVFLLLPS 185
>05_04_0322 +
20239793-20240127,20240176-20240728,20241317-20241425,
20244456-20244723,20244943-20245197,20245594-20246539
Length = 821
Score = 29.5 bits (63), Expect = 2.7
Identities = 14/33 (42%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
Frame = -3
Query: 451 GGYSWSLRYRPG-RISKIQAYRRSRCTSCLLWC 356
G SWS RY+ ISK Y RC C++ C
Sbjct: 665 GALSWSRRYQIAIGISKGLPYLHERCRDCIIHC 697
>08_01_0892 -
8778097-8778236,8778390-8778486,8778568-8778747,
8779138-8779247,8781153-8781294,8782298-8782686,
8782752-8782834,8783524-8785244,8785894-8786040,
8786121-8786264,8786669-8786741,8787413-8787633
Length = 1148
Score = 29.1 bits (62), Expect = 3.5
Identities = 16/76 (21%), Positives = 35/76 (46%)
Frame = +1
Query: 178 YSLPEKHMSGSSVDVIIARVSRVDHESIYKLH*FGTLTTQLARYNNFTTTGTRFHDETEN 357
+ L + + GS +++ V R D +++Y+ G ++ +NN +++G HD N
Sbjct: 739 FKLNQVCIDGSRDELLETDVIRQDIKALYQSIDMGLVSEATVCFNNVSSSGLSVHDTGGN 798
Query: 358 TIASTTYSETSDKLVS 405
I ++ +S
Sbjct: 799 VIGQGDQDSEKNRYLS 814
>07_01_0214 +
1595917-1596526,1597127-1597140,1598414-1598743,
1598853-1598963,1599113-1599269,1603366-1603619,
1603762-1603960,1604341-1604498
Length = 610
Score = 29.1 bits (62), Expect = 3.5
Identities = 16/35 (45%), Positives = 16/35 (45%)
Frame = +3
Query: 267 TSLIWHVDHAACQIQQLHNHGHQIP**NGEHHSKH 371
T L H AA Q H HGH G HHSKH
Sbjct: 247 TPLALHQAAAAAGPSQYHGHGHPHH-GGGHHHSKH 280
>02_01_0137 +
988442-988641,989088-989281,989369-989488,989594-989673,
990244-990510,990840-992458,992571-993327,993560-995506
Length = 1727
Score = 29.1 bits (62), Expect = 3.5
Identities = 16/54 (29%), Positives = 30/54 (55%), Gaps = 4/54 (7%)
Frame = -1
Query: 228 NDYVNTATRHVLLR----QGVLGIKVKIMLPWDQQGKNGPKKPQPDHILVTEPK 79
++ +N H+ +R QGVL +++ + +Q +NGP+K + L+TE K
Sbjct: 359 SERINGIVNHLRIRGNPVQGVLQLEILRQIALPKQSQNGPRKSRLTISLMTEHK 412
>07_03_0670 +
20562188-20562923,20564288-20564826,20564967-20565458,
20566803-20567018
Length = 660
Score = 28.7 bits (61), Expect = 4.7
Identities = 19/49 (38%), Positives = 25/49 (51%)
Frame = +1
Query: 484 NVESLLYYGSQLTDSASFLSEHTLCPGGHNNDLRADGSDPHFHAGVPVL 630
N+ L GS L + +F + TL PGG+ SD H HAG P+L
Sbjct: 469 NISQNLVVGSVLISTVTFAAVFTL-PGGYI-------SDGHPHAGAPIL 509
>02_05_1123 +
34275272-34275331,34275451-34275523,34275631-34275728,
34276012-34276153,34276261-34276361,34276633-34276716,
34276949-34277014,34277102-34277167,34277324-34277404,
34277489-34277566,34277687-34277848,34277936-34278011,
34278111-34278223,34278323-34278751
Length = 542
Score = 28.7 bits (61), Expect = 4.7
Identities = 15/48 (31%), Positives = 23/48 (47%)
Frame = -1
Query: 186 QGVLGIKVKIMLPWDQQGKNGPKKPQPDHILVTEPKDEPVPLEPTSEV 43
Q VL I+ K ++ + P P P +EP+ EP P++ S V
Sbjct: 283 QAVLAIEYKRKPEDEESSSSAPLPPPPVSTSESEPEPEPEPVKEVSPV 330
>08_02_0478 + 17621678-17623768
Length = 696
Score = 28.3 bits (60), Expect = 6.2
Identities = 11/32 (34%), Positives = 21/32 (65%)
Frame = -1
Query: 270 KFVDGLMIHSGDPCNDYVNTATRHVLLRQGVL 175
K + GL+IHSG ND+V+++ + + G++
Sbjct: 421 KQIHGLVIHSGFASNDFVSSSLIFMYSKSGII 452
>02_05_0417 - 28796121-28796743,28796829-28796925,28797010-28797093,
28797173-28797234,28797316-28797460,28797542-28797961,
28798041-28798090,28798163-28798349,28798426-28798680,
28798785-28798953,28799044-28799177,28799291-28799446,
28799534-28799719,28799798-28799962,28800074-28800190,
28800553-28800762,28800850-28801049,28801135-28801405,
28801481-28801547,28801644-28801942,28802425-28802991
Length = 1487
Score = 28.3 bits (60), Expect = 6.2
Identities = 14/45 (31%), Positives = 19/45 (42%)
Frame = -3
Query: 196 ASQARSTRNQGQNHVAVGPARQERPEEATTRPHPGNRAQGRARAP 62
A + R+TRN G A + RP + T + G A AP
Sbjct: 1161 AEERRATRNAGGGAAPNKAAPKRRPRKTATNTQAAESSDGNAAAP 1205
>01_07_0132 -
41298184-41298558,41298648-41298729,41298850-41298977,
41299059-41299157,41299279-41299434,41300709-41300783,
41301962-41302137,41303210-41303252,41303336-41303503,
41303584-41303731,41306316-41306587
Length = 573
Score = 28.3 bits (60), Expect = 6.2
Identities = 15/75 (20%), Positives = 35/75 (46%)
Frame = -1
Query: 381 AVRRACYGVLRFIMESGARGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPCNDYVNTATR 202
A R A G++ + + G G SG+ RGQ +++ ++G + +Y++ A
Sbjct: 472 AARLAAAGIVGILKKLGRDGSGAASSGRGRGQPRRTVVAIEGGLYQGYPVFREYLDEALV 531
Query: 201 HVLLRQGVLGIKVKI 157
+L + + +++
Sbjct: 532 EILGEEVARNVTLRV 546
>08_01_0346 - 3063440-3064189
Length = 249
Score = 27.9 bits (59), Expect = 8.2
Identities = 13/23 (56%), Positives = 14/23 (60%)
Frame = -1
Query: 417 AESLRYKLIGGLAVRRACYGVLR 349
A S L+GG A ACYGVLR
Sbjct: 221 ARSAARVLLGGWAAMAACYGVLR 243
>05_06_0254 -
26706830-26706943,26707063-26707193,26707330-26707417,
26707970-26708087,26708184-26708332,26708787-26708840,
26708963-26709031,26709146-26709246,26709391-26709473,
26709846-26710041,26710171-26710279
Length = 403
Score = 27.9 bits (59), Expect = 8.2
Identities = 11/21 (52%), Positives = 12/21 (57%)
Frame = +2
Query: 86 SVTRMWSGCGFFGPFLPCWSH 148
S T M S CGF G CW+H
Sbjct: 211 SSTGMQSNCGFEGQVNACWTH 231
>01_01_0213 + 1833221-1835062,1835429-1835558,1835726-1836411
Length = 885
Score = 27.9 bits (59), Expect = 8.2
Identities = 10/25 (40%), Positives = 14/25 (56%)
Frame = -1
Query: 123 PKKPQPDHILVTEPKDEPVPLEPTS 49
P+ +PD +LV P P PL P +
Sbjct: 129 PRADEPDVVLVLPPSQRPPPLSPAA 153
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,410,557
Number of Sequences: 37544
Number of extensions: 473391
Number of successful extensions: 1707
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1598
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1702
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1792053856
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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