Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc15l12
(699 letters)
Database: fruitfly
53,049 sequences; 24,988,368 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
L13690-1|AAA28875.1| 246|Drosophila melanogaster ribosomal prot... 338 3e-93
BT024258-1|ABC86320.1| 253|Drosophila melanogaster IP15838p pro... 338 3e-93
AY118971-1|AAM50831.1| 246|Drosophila melanogaster LD47488p pro... 338 3e-93
AE014297-3319|AAF56129.1| 246|Drosophila melanogaster CG6779-PA... 338 3e-93
X72921-1|CAA51425.1| 246|Drosophila melanogaster ribosomal prot... 331 6e-91
AJ238847-1|CAB52798.1| 1301|Drosophila melanogaster drosophila d... 35 0.12
AF132179-1|AAD34767.1| 1301|Drosophila melanogaster unknown prot... 35 0.12
AE013599-2691|AAM68451.1| 1301|Drosophila melanogaster CG5170-PF... 35 0.12
AE013599-2690|AAM68450.1| 1301|Drosophila melanogaster CG5170-PE... 35 0.12
AE013599-2689|AAM68449.1| 1301|Drosophila melanogaster CG5170-PD... 35 0.12
AE013599-2688|AAF57691.2| 1301|Drosophila melanogaster CG5170-PC... 35 0.12
AE013599-2687|AAS64810.1| 1301|Drosophila melanogaster CG5170-PB... 35 0.12
AE013599-2686|AAS64809.1| 1301|Drosophila melanogaster CG5170-PA... 35 0.12
AE014296-1273|AAF50550.2| 478|Drosophila melanogaster CG8540-PA... 30 3.5
AE014297-610|AAF54020.1| 693|Drosophila melanogaster CG10101-PA... 29 8.0
>L13690-1|AAA28875.1| 246|Drosophila melanogaster ribosomal protein
S3/AP endonucleaseDNA repair protein protein.
Length = 246
Score = 338 bits (832), Expect = 3e-93
Identities = 162/200 (81%), Positives = 178/200 (89%)
Frame = -1
Query: 639 ELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRRIRELTSVVQKRFNIPEQSVELY 460
ELAEDGYSGVEVRVTP R+EIIIMAT+TQ VLGEKGRRIRELT++VQKRFN +ELY
Sbjct: 30 ELAEDGYSGVEVRVTPSRTEIIIMATKTQQVLGEKGRRIRELTAMVQKRFNFETGRIELY 89
Query: 459 AEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIMESGARGCEVVVSGKLRGQRA 280
AEKVA RGLCAIAQAESLRYKL GGLAVRRACYGVLR+IMESGA+GCEVVVSGKLRGQRA
Sbjct: 90 AEKVAARGLCAIAQAESLRYKLTGGLAVRRACYGVLRYIMESGAKGCEVVVSGKLRGQRA 149
Query: 279 KSMKFVDGLMIHSGDPCNDYVNTATRHVLLRQGVLGIKVKIMLPWDQQGKNGPKKPQPDH 100
KSMKFVDGLMIHSGDPCNDYV TATRHVLLRQGVLGIKVK+MLP+D + K GPKKP PD+
Sbjct: 150 KSMKFVDGLMIHSGDPCNDYVETATRHVLLRQGVLGIKVKVMLPYDPKNKIGPKKPLPDN 209
Query: 99 ILVTEPKDEPVPLEPTSEVR 40
+ V EPK+E + P +E +
Sbjct: 210 VSVVEPKEEKIYETPETEYK 229
Score = 38.3 bits (85), Expect = 0.010
Identities = 16/18 (88%), Positives = 17/18 (94%)
Frame = -3
Query: 697 RKFVGDGVFKAELNEFLT 644
RKFV DG+FKAELNEFLT
Sbjct: 11 RKFVSDGIFKAELNEFLT 28
>BT024258-1|ABC86320.1| 253|Drosophila melanogaster IP15838p
protein.
Length = 253
Score = 338 bits (832), Expect = 3e-93
Identities = 162/200 (81%), Positives = 178/200 (89%)
Frame = -1
Query: 639 ELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRRIRELTSVVQKRFNIPEQSVELY 460
ELAEDGYSGVEVRVTP R+EIIIMAT+TQ VLGEKGRRIRELT++VQKRFN +ELY
Sbjct: 37 ELAEDGYSGVEVRVTPSRTEIIIMATKTQQVLGEKGRRIRELTAMVQKRFNFETGRIELY 96
Query: 459 AEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIMESGARGCEVVVSGKLRGQRA 280
AEKVA RGLCAIAQAESLRYKL GGLAVRRACYGVLR+IMESGA+GCEVVVSGKLRGQRA
Sbjct: 97 AEKVAARGLCAIAQAESLRYKLTGGLAVRRACYGVLRYIMESGAKGCEVVVSGKLRGQRA 156
Query: 279 KSMKFVDGLMIHSGDPCNDYVNTATRHVLLRQGVLGIKVKIMLPWDQQGKNGPKKPQPDH 100
KSMKFVDGLMIHSGDPCNDYV TATRHVLLRQGVLGIKVK+MLP+D + K GPKKP PD+
Sbjct: 157 KSMKFVDGLMIHSGDPCNDYVETATRHVLLRQGVLGIKVKVMLPYDPKNKIGPKKPLPDN 216
Query: 99 ILVTEPKDEPVPLEPTSEVR 40
+ V EPK+E + P +E +
Sbjct: 217 VSVVEPKEEKIYETPETEYK 236
Score = 38.3 bits (85), Expect = 0.010
Identities = 16/18 (88%), Positives = 17/18 (94%)
Frame = -3
Query: 697 RKFVGDGVFKAELNEFLT 644
RKFV DG+FKAELNEFLT
Sbjct: 18 RKFVSDGIFKAELNEFLT 35
>AY118971-1|AAM50831.1| 246|Drosophila melanogaster LD47488p
protein.
Length = 246
Score = 338 bits (832), Expect = 3e-93
Identities = 162/200 (81%), Positives = 178/200 (89%)
Frame = -1
Query: 639 ELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRRIRELTSVVQKRFNIPEQSVELY 460
ELAEDGYSGVEVRVTP R+EIIIMAT+TQ VLGEKGRRIRELT++VQKRFN +ELY
Sbjct: 30 ELAEDGYSGVEVRVTPSRTEIIIMATKTQQVLGEKGRRIRELTAMVQKRFNFETGRIELY 89
Query: 459 AEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIMESGARGCEVVVSGKLRGQRA 280
AEKVA RGLCAIAQAESLRYKL GGLAVRRACYGVLR+IMESGA+GCEVVVSGKLRGQRA
Sbjct: 90 AEKVAARGLCAIAQAESLRYKLTGGLAVRRACYGVLRYIMESGAKGCEVVVSGKLRGQRA 149
Query: 279 KSMKFVDGLMIHSGDPCNDYVNTATRHVLLRQGVLGIKVKIMLPWDQQGKNGPKKPQPDH 100
KSMKFVDGLMIHSGDPCNDYV TATRHVLLRQGVLGIKVK+MLP+D + K GPKKP PD+
Sbjct: 150 KSMKFVDGLMIHSGDPCNDYVETATRHVLLRQGVLGIKVKVMLPYDPKNKIGPKKPLPDN 209
Query: 99 ILVTEPKDEPVPLEPTSEVR 40
+ V EPK+E + P +E +
Sbjct: 210 VSVVEPKEEKIYETPETEYK 229
Score = 38.3 bits (85), Expect = 0.010
Identities = 16/18 (88%), Positives = 17/18 (94%)
Frame = -3
Query: 697 RKFVGDGVFKAELNEFLT 644
RKFV DG+FKAELNEFLT
Sbjct: 11 RKFVSDGIFKAELNEFLT 28
>AE014297-3319|AAF56129.1| 246|Drosophila melanogaster CG6779-PA
protein.
Length = 246
Score = 338 bits (832), Expect = 3e-93
Identities = 162/200 (81%), Positives = 178/200 (89%)
Frame = -1
Query: 639 ELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRRIRELTSVVQKRFNIPEQSVELY 460
ELAEDGYSGVEVRVTP R+EIIIMAT+TQ VLGEKGRRIRELT++VQKRFN +ELY
Sbjct: 30 ELAEDGYSGVEVRVTPSRTEIIIMATKTQQVLGEKGRRIRELTAMVQKRFNFETGRIELY 89
Query: 459 AEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIMESGARGCEVVVSGKLRGQRA 280
AEKVA RGLCAIAQAESLRYKL GGLAVRRACYGVLR+IMESGA+GCEVVVSGKLRGQRA
Sbjct: 90 AEKVAARGLCAIAQAESLRYKLTGGLAVRRACYGVLRYIMESGAKGCEVVVSGKLRGQRA 149
Query: 279 KSMKFVDGLMIHSGDPCNDYVNTATRHVLLRQGVLGIKVKIMLPWDQQGKNGPKKPQPDH 100
KSMKFVDGLMIHSGDPCNDYV TATRHVLLRQGVLGIKVK+MLP+D + K GPKKP PD+
Sbjct: 150 KSMKFVDGLMIHSGDPCNDYVETATRHVLLRQGVLGIKVKVMLPYDPKNKIGPKKPLPDN 209
Query: 99 ILVTEPKDEPVPLEPTSEVR 40
+ V EPK+E + P +E +
Sbjct: 210 VSVVEPKEEKIYETPETEYK 229
Score = 38.3 bits (85), Expect = 0.010
Identities = 16/18 (88%), Positives = 17/18 (94%)
Frame = -3
Query: 697 RKFVGDGVFKAELNEFLT 644
RKFV DG+FKAELNEFLT
Sbjct: 11 RKFVSDGIFKAELNEFLT 28
>X72921-1|CAA51425.1| 246|Drosophila melanogaster ribosomal protein
S3 protein.
Length = 246
Score = 331 bits (813), Expect = 6e-91
Identities = 159/200 (79%), Positives = 175/200 (87%)
Frame = -1
Query: 639 ELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRRIRELTSVVQKRFNIPEQSVELY 460
ELAEDGYSGVEVRVTP +EIIIMAT+TQ VL EKGRRIRELT++VQKRFN +ELY
Sbjct: 30 ELAEDGYSGVEVRVTPFGTEIIIMATKTQQVLAEKGRRIRELTAMVQKRFNFETGRIELY 89
Query: 459 AEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIMESGARGCEVVVSGKLRGQRA 280
AEKVA RGLCAIAQAESLRYKL G LAVRRACYGVLR+IMESGA+GCEVVVSGKLRGQRA
Sbjct: 90 AEKVAARGLCAIAQAESLRYKLTGELAVRRACYGVLRYIMESGAKGCEVVVSGKLRGQRA 149
Query: 279 KSMKFVDGLMIHSGDPCNDYVNTATRHVLLRQGVLGIKVKIMLPWDQQGKNGPKKPQPDH 100
KSMKFVDGLMIHSGDPCNDYV TATRHVLLRQGVLGIKVK+MLP+D + K GPKKP PD+
Sbjct: 150 KSMKFVDGLMIHSGDPCNDYVETATRHVLLRQGVLGIKVKVMLPYDPKNKIGPKKPLPDN 209
Query: 99 ILVTEPKDEPVPLEPTSEVR 40
+ V EPK+E + P +E +
Sbjct: 210 VSVVEPKEEKIYETPETEYK 229
Score = 38.3 bits (85), Expect = 0.010
Identities = 16/18 (88%), Positives = 17/18 (94%)
Frame = -3
Query: 697 RKFVGDGVFKAELNEFLT 644
RKFV DG+FKAELNEFLT
Sbjct: 11 RKFVSDGIFKAELNEFLT 28
>AJ238847-1|CAB52798.1| 1301|Drosophila melanogaster drosophila
dodeca-satellite protein1 protein.
Length = 1301
Score = 34.7 bits (76), Expect = 0.12
Identities = 22/63 (34%), Positives = 33/63 (52%), Gaps = 1/63 (1%)
Frame = -1
Query: 597 TPIRSEIIIMATRTQSVLGEKGRRIRELTSVVQKRFNIPEQSVELYAEKVATRGLC-AIA 421
T ++ + + +LG+ G+R+RE+ V R NIP QS E +E + G IA
Sbjct: 167 TQASRQVTVPREHFRVILGKGGQRLREIERVTATRINIPSQSDE--SEFITIAGTKEGIA 224
Query: 420 QAE 412
QAE
Sbjct: 225 QAE 227
>AF132179-1|AAD34767.1| 1301|Drosophila melanogaster unknown
protein.
Length = 1301
Score = 34.7 bits (76), Expect = 0.12
Identities = 22/63 (34%), Positives = 33/63 (52%), Gaps = 1/63 (1%)
Frame = -1
Query: 597 TPIRSEIIIMATRTQSVLGEKGRRIRELTSVVQKRFNIPEQSVELYAEKVATRGLC-AIA 421
T ++ + + +LG+ G+R+RE+ V R NIP QS E +E + G IA
Sbjct: 167 TQASRQVTVPREHFRVILGKGGQRLREIERVTATRINIPSQSDE--SEFITIAGTKEGIA 224
Query: 420 QAE 412
QAE
Sbjct: 225 QAE 227
>AE013599-2691|AAM68451.1| 1301|Drosophila melanogaster CG5170-PF,
isoform F protein.
Length = 1301
Score = 34.7 bits (76), Expect = 0.12
Identities = 22/63 (34%), Positives = 33/63 (52%), Gaps = 1/63 (1%)
Frame = -1
Query: 597 TPIRSEIIIMATRTQSVLGEKGRRIRELTSVVQKRFNIPEQSVELYAEKVATRGLC-AIA 421
T ++ + + +LG+ G+R+RE+ V R NIP QS E +E + G IA
Sbjct: 167 TQASRQVTVPREHFRVILGKGGQRLREIERVTATRINIPSQSDE--SEFITIAGTKEGIA 224
Query: 420 QAE 412
QAE
Sbjct: 225 QAE 227
>AE013599-2690|AAM68450.1| 1301|Drosophila melanogaster CG5170-PE,
isoform E protein.
Length = 1301
Score = 34.7 bits (76), Expect = 0.12
Identities = 22/63 (34%), Positives = 33/63 (52%), Gaps = 1/63 (1%)
Frame = -1
Query: 597 TPIRSEIIIMATRTQSVLGEKGRRIRELTSVVQKRFNIPEQSVELYAEKVATRGLC-AIA 421
T ++ + + +LG+ G+R+RE+ V R NIP QS E +E + G IA
Sbjct: 167 TQASRQVTVPREHFRVILGKGGQRLREIERVTATRINIPSQSDE--SEFITIAGTKEGIA 224
Query: 420 QAE 412
QAE
Sbjct: 225 QAE 227
>AE013599-2689|AAM68449.1| 1301|Drosophila melanogaster CG5170-PD,
isoform D protein.
Length = 1301
Score = 34.7 bits (76), Expect = 0.12
Identities = 22/63 (34%), Positives = 33/63 (52%), Gaps = 1/63 (1%)
Frame = -1
Query: 597 TPIRSEIIIMATRTQSVLGEKGRRIRELTSVVQKRFNIPEQSVELYAEKVATRGLC-AIA 421
T ++ + + +LG+ G+R+RE+ V R NIP QS E +E + G IA
Sbjct: 167 TQASRQVTVPREHFRVILGKGGQRLREIERVTATRINIPSQSDE--SEFITIAGTKEGIA 224
Query: 420 QAE 412
QAE
Sbjct: 225 QAE 227
>AE013599-2688|AAF57691.2| 1301|Drosophila melanogaster CG5170-PC,
isoform C protein.
Length = 1301
Score = 34.7 bits (76), Expect = 0.12
Identities = 22/63 (34%), Positives = 33/63 (52%), Gaps = 1/63 (1%)
Frame = -1
Query: 597 TPIRSEIIIMATRTQSVLGEKGRRIRELTSVVQKRFNIPEQSVELYAEKVATRGLC-AIA 421
T ++ + + +LG+ G+R+RE+ V R NIP QS E +E + G IA
Sbjct: 167 TQASRQVTVPREHFRVILGKGGQRLREIERVTATRINIPSQSDE--SEFITIAGTKEGIA 224
Query: 420 QAE 412
QAE
Sbjct: 225 QAE 227
>AE013599-2687|AAS64810.1| 1301|Drosophila melanogaster CG5170-PB,
isoform B protein.
Length = 1301
Score = 34.7 bits (76), Expect = 0.12
Identities = 22/63 (34%), Positives = 33/63 (52%), Gaps = 1/63 (1%)
Frame = -1
Query: 597 TPIRSEIIIMATRTQSVLGEKGRRIRELTSVVQKRFNIPEQSVELYAEKVATRGLC-AIA 421
T ++ + + +LG+ G+R+RE+ V R NIP QS E +E + G IA
Sbjct: 167 TQASRQVTVPREHFRVILGKGGQRLREIERVTATRINIPSQSDE--SEFITIAGTKEGIA 224
Query: 420 QAE 412
QAE
Sbjct: 225 QAE 227
>AE013599-2686|AAS64809.1| 1301|Drosophila melanogaster CG5170-PA,
isoform A protein.
Length = 1301
Score = 34.7 bits (76), Expect = 0.12
Identities = 22/63 (34%), Positives = 33/63 (52%), Gaps = 1/63 (1%)
Frame = -1
Query: 597 TPIRSEIIIMATRTQSVLGEKGRRIRELTSVVQKRFNIPEQSVELYAEKVATRGLC-AIA 421
T ++ + + +LG+ G+R+RE+ V R NIP QS E +E + G IA
Sbjct: 167 TQASRQVTVPREHFRVILGKGGQRLREIERVTATRINIPSQSDE--SEFITIAGTKEGIA 224
Query: 420 QAE 412
QAE
Sbjct: 225 QAE 227
>AE014296-1273|AAF50550.2| 478|Drosophila melanogaster CG8540-PA
protein.
Length = 478
Score = 29.9 bits (64), Expect = 3.5
Identities = 14/69 (20%), Positives = 34/69 (49%)
Frame = -1
Query: 696 ENLLEMGFSRQNSMSSSLGELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRRIRE 517
E L+++ + + L + A+ + V+PI ++++M T E + +++
Sbjct: 137 EQLIDLSRHQTEQLLQKLAKQADQKVFDIWYTVSPIVLDLMVMTTCGAKPSEEYSKNLKD 196
Query: 516 LTSVVQKRF 490
L+ + +KRF
Sbjct: 197 LSEIYRKRF 205
>AE014297-610|AAF54020.1| 693|Drosophila melanogaster CG10101-PA
protein.
Length = 693
Score = 28.7 bits (61), Expect = 8.0
Identities = 15/36 (41%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
Frame = +1
Query: 454 FSIQFYR--LLWNVESLLYYGSQLTDSASFLSEHTL 555
+ +QFYR + N E L++YGS T SEH L
Sbjct: 103 YRVQFYRPEMSANFEDLMFYGSPRTAVLVLNSEHVL 138
Database: fruitfly
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 24,988,368
Number of sequences in database: 53,049
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 33,165,226
Number of Sequences: 53049
Number of extensions: 769398
Number of successful extensions: 3818
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 2803
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3818
length of database: 24,988,368
effective HSP length: 83
effective length of database: 20,585,301
effective search space used: 3067209849
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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