Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc15l12
(699 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U39851-9|AAF99870.1| 247|Caenorhabditis elegans Ribosomal prote... 323 9e-89
Z34802-8|CAH10787.1| 704|Caenorhabditis elegans Hypothetical pr... 30 1.4
Z34802-7|CAA84338.2| 828|Caenorhabditis elegans Hypothetical pr... 30 1.4
AL034393-1|CAA22308.1| 1634|Caenorhabditis elegans Hypothetical ... 29 2.4
U00036-2|AAK29859.1| 592|Caenorhabditis elegans Dumpy : shorter... 29 3.2
AC006605-4|AAK85441.2| 1378|Caenorhabditis elegans Hypothetical ... 29 4.2
U70856-4|AAB09167.1| 2090|Caenorhabditis elegans Hypothetical pr... 28 5.6
U70856-3|AAB09166.1| 2153|Caenorhabditis elegans Gei-4(four) int... 28 5.6
Z81586-11|CAF31485.1| 1165|Caenorhabditis elegans Hypothetical p... 28 7.4
Z70686-12|CAB54289.1| 2584|Caenorhabditis elegans Hypothetical p... 28 7.4
Z70686-11|CAA94615.1| 2606|Caenorhabditis elegans Hypothetical p... 28 7.4
Z70686-8|CAM35837.1| 1427|Caenorhabditis elegans Hypothetical pr... 28 7.4
Z70686-7|CAM35836.1| 1405|Caenorhabditis elegans Hypothetical pr... 28 7.4
Z70310-9|CAB54294.1| 2584|Caenorhabditis elegans Hypothetical pr... 28 7.4
Z70310-8|CAA94370.1| 2606|Caenorhabditis elegans Hypothetical pr... 28 7.4
Z50110-1|CAA90444.1| 692|Caenorhabditis elegans Hypothetical pr... 28 7.4
U58749-5|AAU05597.1| 1551|Caenorhabditis elegans Hypothetical pr... 28 7.4
U58749-4|AAU05598.1| 1592|Caenorhabditis elegans Hypothetical pr... 28 7.4
Z69302-1|CAA93264.1| 191|Caenorhabditis elegans Hypothetical pr... 27 9.8
>U39851-9|AAF99870.1| 247|Caenorhabditis elegans Ribosomal protein,
small subunitprotein 3 protein.
Length = 247
Score = 323 bits (793), Expect = 9e-89
Identities = 151/198 (76%), Positives = 174/198 (87%)
Frame = -1
Query: 639 ELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRRIRELTSVVQKRFNIPEQSVELY 460
ELAEDGYSGVEVR TP R+E+IIMATRTQ+VLGE+GRRI+ELTSVVQKRF E SVELY
Sbjct: 30 ELAEDGYSGVEVRSTPARAEVIIMATRTQNVLGERGRRIKELTSVVQKRFGFEEGSVELY 89
Query: 459 AEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIMESGARGCEVVVSGKLRGQRA 280
AEKV+ RGLCA+AQ ESLRYKL+GGLAVRRACYGVLRFIMESGA+G EV+VSGKLRGQRA
Sbjct: 90 AEKVSNRGLCAVAQCESLRYKLVGGLAVRRACYGVLRFIMESGAQGVEVIVSGKLRGQRA 149
Query: 279 KSMKFVDGLMIHSGDPCNDYVNTATRHVLLRQGVLGIKVKIMLPWDQQGKNGPKKPQPDH 100
K+MKFVDGLMIHSG P NDY+ A RHV LRQGV+GIKVKIMLP+D +G+NGP+ PDH
Sbjct: 150 KAMKFVDGLMIHSGHPVNDYIQQAVRHVQLRQGVIGIKVKIMLPYDPRGQNGPRNALPDH 209
Query: 99 ILVTEPKDEPVPLEPTSE 46
+ + EP++E +P EP S+
Sbjct: 210 VQIVEPQEEVLPKEPHSQ 227
>Z34802-8|CAH10787.1| 704|Caenorhabditis elegans Hypothetical
protein M88.5b protein.
Length = 704
Score = 30.3 bits (65), Expect = 1.4
Identities = 20/67 (29%), Positives = 32/67 (47%)
Frame = -1
Query: 675 FSRQNSMSSSLGELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRRIRELTSVVQK 496
FS+ SSSL DG +R IR+E+ + ++G+ G+ +REL +
Sbjct: 533 FSKIAETSSSLPSSGMDGDRSHMLR---IRTEVSVPTRIIGRIIGKGGQNVRELQRITGA 589
Query: 495 RFNIPEQ 475
IPE+
Sbjct: 590 VVKIPEE 596
>Z34802-7|CAA84338.2| 828|Caenorhabditis elegans Hypothetical
protein M88.5a protein.
Length = 828
Score = 30.3 bits (65), Expect = 1.4
Identities = 20/67 (29%), Positives = 32/67 (47%)
Frame = -1
Query: 675 FSRQNSMSSSLGELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRRIRELTSVVQK 496
FS+ SSSL DG +R IR+E+ + ++G+ G+ +REL +
Sbjct: 657 FSKIAETSSSLPSSGMDGDRSHMLR---IRTEVSVPTRIIGRIIGKGGQNVRELQRITGA 713
Query: 495 RFNIPEQ 475
IPE+
Sbjct: 714 VVKIPEE 720
>AL034393-1|CAA22308.1| 1634|Caenorhabditis elegans Hypothetical
protein Y18D10A.1 protein.
Length = 1634
Score = 29.5 bits (63), Expect = 2.4
Identities = 13/40 (32%), Positives = 25/40 (62%)
Frame = -1
Query: 558 TQSVLGEKGRRIRELTSVVQKRFNIPEQSVELYAEKVATR 439
+ S+ G+KG+ +REL + + K ++ E++ + AE A R
Sbjct: 396 SSSIHGKKGKTVRELQTEMMKGESVKEKAARMRAEASAGR 435
>U00036-2|AAK29859.1| 592|Caenorhabditis elegans Dumpy : shorter
than wild-typeprotein 31, isoform a protein.
Length = 592
Score = 29.1 bits (62), Expect = 3.2
Identities = 19/49 (38%), Positives = 25/49 (51%), Gaps = 4/49 (8%)
Frame = -2
Query: 677 GFQGRTQ*VPH*GSW----PRTGTPAWKCGSLPSARRSLLWPPGHRVCS 543
GF+ R + VP G+W P T A CG+ S R+ PPG+ CS
Sbjct: 479 GFEARARAVPEAGNWNSWSPWTACSA-TCGACGSRMRTRTCPPGN-ACS 525
>AC006605-4|AAK85441.2| 1378|Caenorhabditis elegans Hypothetical
protein C07H6.3 protein.
Length = 1378
Score = 28.7 bits (61), Expect = 4.2
Identities = 14/25 (56%), Positives = 15/25 (60%)
Frame = +3
Query: 612 RRSTRPRPAPLVRNSLSSALKTPSP 686
R ST PRP SLS A +TPSP
Sbjct: 280 RLSTPPRPTTTAAQSLSLAPQTPSP 304
>U70856-4|AAB09167.1| 2090|Caenorhabditis elegans Hypothetical protein
F57F4.4 protein.
Length = 2090
Score = 28.3 bits (60), Expect = 5.6
Identities = 13/23 (56%), Positives = 13/23 (56%)
Frame = -3
Query: 217 QHCYQTCASQARSTRNQGQNHVA 149
Q CY CAS ST Q QNH A
Sbjct: 1799 QGCYGDCASITISTTIQNQNHTA 1821
>U70856-3|AAB09166.1| 2153|Caenorhabditis elegans Gei-4(four)
interacting proteinprotein 1 protein.
Length = 2153
Score = 28.3 bits (60), Expect = 5.6
Identities = 13/23 (56%), Positives = 13/23 (56%)
Frame = -3
Query: 217 QHCYQTCASQARSTRNQGQNHVA 149
Q CY CAS ST Q QNH A
Sbjct: 1799 QGCYGDCASITISTTIQNQNHTA 1821
>Z81586-11|CAF31485.1| 1165|Caenorhabditis elegans Hypothetical
protein T05F1.6 protein.
Length = 1165
Score = 27.9 bits (59), Expect = 7.4
Identities = 16/42 (38%), Positives = 22/42 (52%)
Frame = -3
Query: 184 RSTRNQGQNHVAVGPARQERPEEATTRPHPGNRAQGRARAPR 59
RSTR +G+ A QE+ E T+ H N+A+ R PR
Sbjct: 430 RSTRGRGRKSQANEENLQEKETEDPTKTHDTNQAKS-TRTPR 470
>Z70686-12|CAB54289.1| 2584|Caenorhabditis elegans Hypothetical
protein R11A8.7b protein.
Length = 2584
Score = 27.9 bits (59), Expect = 7.4
Identities = 11/26 (42%), Positives = 18/26 (69%), Gaps = 3/26 (11%)
Frame = -1
Query: 114 PQPDHILVTEPKDEPVPL---EPTSE 46
P+P+ ++++EP EPVP+ EP E
Sbjct: 1647 PEPEPVVISEPVPEPVPIVVEEPPKE 1672
>Z70686-11|CAA94615.1| 2606|Caenorhabditis elegans Hypothetical
protein R11A8.7a protein.
Length = 2606
Score = 27.9 bits (59), Expect = 7.4
Identities = 11/26 (42%), Positives = 18/26 (69%), Gaps = 3/26 (11%)
Frame = -1
Query: 114 PQPDHILVTEPKDEPVPL---EPTSE 46
P+P+ ++++EP EPVP+ EP E
Sbjct: 1647 PEPEPVVISEPVPEPVPIVVEEPPKE 1672
>Z70686-8|CAM35837.1| 1427|Caenorhabditis elegans Hypothetical
protein R11A8.7d protein.
Length = 1427
Score = 27.9 bits (59), Expect = 7.4
Identities = 11/26 (42%), Positives = 18/26 (69%), Gaps = 3/26 (11%)
Frame = -1
Query: 114 PQPDHILVTEPKDEPVPL---EPTSE 46
P+P+ ++++EP EPVP+ EP E
Sbjct: 468 PEPEPVVISEPVPEPVPIVVEEPPKE 493
>Z70686-7|CAM35836.1| 1405|Caenorhabditis elegans Hypothetical
protein R11A8.7c protein.
Length = 1405
Score = 27.9 bits (59), Expect = 7.4
Identities = 11/26 (42%), Positives = 18/26 (69%), Gaps = 3/26 (11%)
Frame = -1
Query: 114 PQPDHILVTEPKDEPVPL---EPTSE 46
P+P+ ++++EP EPVP+ EP E
Sbjct: 468 PEPEPVVISEPVPEPVPIVVEEPPKE 493
>Z70310-9|CAB54294.1| 2584|Caenorhabditis elegans Hypothetical protein
R11A8.7b protein.
Length = 2584
Score = 27.9 bits (59), Expect = 7.4
Identities = 11/26 (42%), Positives = 18/26 (69%), Gaps = 3/26 (11%)
Frame = -1
Query: 114 PQPDHILVTEPKDEPVPL---EPTSE 46
P+P+ ++++EP EPVP+ EP E
Sbjct: 1647 PEPEPVVISEPVPEPVPIVVEEPPKE 1672
>Z70310-8|CAA94370.1| 2606|Caenorhabditis elegans Hypothetical protein
R11A8.7a protein.
Length = 2606
Score = 27.9 bits (59), Expect = 7.4
Identities = 11/26 (42%), Positives = 18/26 (69%), Gaps = 3/26 (11%)
Frame = -1
Query: 114 PQPDHILVTEPKDEPVPL---EPTSE 46
P+P+ ++++EP EPVP+ EP E
Sbjct: 1647 PEPEPVVISEPVPEPVPIVVEEPPKE 1672
>Z50110-1|CAA90444.1| 692|Caenorhabditis elegans Hypothetical
protein F18H3.3a protein.
Length = 692
Score = 27.9 bits (59), Expect = 7.4
Identities = 13/42 (30%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
Frame = -3
Query: 190 QARSTRNQGQNHVAVGPARQERPEEATTRP--HPGNRAQGRA 71
Q + R Q GP RQ++P++ + +P PG + QG++
Sbjct: 553 QGPAPRGAPQKPFYQGPPRQQQPQQHSQQPAQQPGQQGQGQS 594
>U58749-5|AAU05597.1| 1551|Caenorhabditis elegans Hypothetical
protein B0496.3a protein.
Length = 1551
Score = 27.9 bits (59), Expect = 7.4
Identities = 12/34 (35%), Positives = 20/34 (58%)
Frame = +2
Query: 71 GSSLGSVTRMWSGCGFFGPFLPCWSHGNMILTLI 172
GS L + + +G + GP + CWS G ++ TL+
Sbjct: 234 GSPLYASPEIINGTPYKGPEVDCWSLGILLYTLV 267
>U58749-4|AAU05598.1| 1592|Caenorhabditis elegans Hypothetical
protein B0496.3b protein.
Length = 1592
Score = 27.9 bits (59), Expect = 7.4
Identities = 12/34 (35%), Positives = 20/34 (58%)
Frame = +2
Query: 71 GSSLGSVTRMWSGCGFFGPFLPCWSHGNMILTLI 172
GS L + + +G + GP + CWS G ++ TL+
Sbjct: 234 GSPLYASPEIINGTPYKGPEVDCWSLGILLYTLV 267
>Z69302-1|CAA93264.1| 191|Caenorhabditis elegans Hypothetical
protein F40F8.1 protein.
Length = 191
Score = 27.5 bits (58), Expect = 9.8
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = +1
Query: 1 SGDRLRQRRGREGAHFAGRLEGH 69
+GD LR R REG+ F +E H
Sbjct: 33 AGDLLRAERQREGSEFGALIESH 55
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,389,727
Number of Sequences: 27780
Number of extensions: 373152
Number of successful extensions: 1286
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 1194
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1277
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1613473434
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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