Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc15l11
         (639 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB194707-1|BAD69622.1|  247|Apis mellifera heme oxygenase protein.     24   1.1  
DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly pro...    23   1.9  
AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    22   4.4  
L01587-1|AAA27734.1|   69|Apis mellifera zinc finger protein pro...    22   5.8  
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    22   5.8  
DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride c...    21   7.6  
AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl sub...    21   7.6  

>AB194707-1|BAD69622.1|  247|Apis mellifera heme oxygenase protein.
          Length = 247

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 13/39 (33%), Positives = 21/39 (53%)
 Frame = -2

Query: 251 LDEMLTKKLIESNAMVFDETNKNLKFIHNSISICLNRCI 135
           LDE    KLIE +  VF   N+ ++ I  + +I L + +
Sbjct: 189 LDEDTKNKLIEESKTVFILNNEIIRSIQGTGTIILKKTV 227



 Score = 21.8 bits (44), Expect = 5.8
 Identities = 9/38 (23%), Positives = 19/38 (50%)
 Frame = +3

Query: 423 LQQLYVSTIQFGLIYSSAQSYLQSNFVFKKLVMISLNV 536
           +  LY+  +  G+I    + ++Q  + FK+  M   N+
Sbjct: 126 IYHLYMGLLSGGIILRKKREFMQKIWPFKEYQMNGNNI 163


>DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly
           protein 9 protein.
          Length = 423

 Score = 23.4 bits (48), Expect = 1.9
 Identities = 9/32 (28%), Positives = 21/32 (65%)
 Frame = +2

Query: 482 VSAIQFRVQEIGDDIFERARFQFVFIGQRKFQ 577
           +S I+  +++I  +I+ER   ++++I   K+Q
Sbjct: 351 ISGIKI-IKQISSNIYERQNNEYIWIVSNKYQ 381


>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 8/23 (34%), Positives = 12/23 (52%), Gaps = 1/23 (4%)
 Frame = -3

Query: 493 DCRYD-CADEYIKPNCIVDTYNC 428
           +CR   C    ++P C+V  Y C
Sbjct: 241 ECRLKKCLTVGMRPECVVPEYQC 263


>L01587-1|AAA27734.1|   69|Apis mellifera zinc finger protein
           protein.
          Length = 69

 Score = 21.8 bits (44), Expect = 5.8
 Identities = 9/35 (25%), Positives = 17/35 (48%)
 Frame = -2

Query: 152 CLNRCINLITIKHYVQ*YGFLFYNIYVYEISNCYY 48
           C   C+N   +  +++ +     N+Y Y  +NC Y
Sbjct: 22  CSYSCVNKSMLNSHLKSHS----NVYQYRCANCTY 52


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 21.8 bits (44), Expect = 5.8
 Identities = 9/27 (33%), Positives = 13/27 (48%)
 Frame = +2

Query: 233 LLAFHLKNQTVCPARLRILWCNRACRC 313
           L  + LK++   P    I  CN+ C C
Sbjct: 454 LCPYTLKHKIRVPPGTPIYECNKRCNC 480


>DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 21.4 bits (43), Expect = 7.6
 Identities = 10/31 (32%), Positives = 17/31 (54%)
 Frame = -1

Query: 186 KFKIYSQQHQHMFKSLYKFNYNKTLCTIIWV 94
           +FK+   + + M  SL   NY++  C I +V
Sbjct: 187 QFKVLGHRQRAMEISLTTGNYSRLACEIQFV 217


>AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl
           subunit protein.
          Length = 365

 Score = 21.4 bits (43), Expect = 7.6
 Identities = 10/31 (32%), Positives = 17/31 (54%)
 Frame = -1

Query: 186 KFKIYSQQHQHMFKSLYKFNYNKTLCTIIWV 94
           +FK+   + + M  SL   NY++  C I +V
Sbjct: 126 QFKVLGHRQRAMEISLTTGNYSRLACEIQFV 156


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 153,635
Number of Sequences: 438
Number of extensions: 3086
Number of successful extensions: 11
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19193721
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)