Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc15l06
         (654 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_06_0105 - 10790092-10790323,10791092-10791234,10791322-107914...    35   0.049
01_05_0011 + 17133501-17133738,17135335-17135607,17145224-171453...    28   5.6  
01_05_0297 - 20578031-20578080,20578162-20578236,20578317-205784...    28   7.5  

>10_06_0105 - 10790092-10790323,10791092-10791234,10791322-10791429,
            10791796-10791903,10793133-10797686,10798347-10798461,
            10799597-10799724,10799843-10800043,10800158-10800227,
            10801233-10801314,10801433-10801556,10801761-10801778
          Length = 1960

 Score = 35.1 bits (77), Expect = 0.049
 Identities = 25/69 (36%), Positives = 37/69 (53%), Gaps = 1/69 (1%)
 Frame = -3

Query: 229  EIENDKIYKLVETVDSSNKLSRRQVDFL-IHALLNNVSVTFTLHRFVDDNVLTQDELSFL 53
            ++  DK   +VE++DSS ++ + Q D L +  LL N      L   VDD   T+DE+  L
Sbjct: 1404 QVGTDKSRDIVESIDSSERVLKYQDDILQLKVLLTN------LEEQVDDLRSTKDEVEIL 1457

Query: 52   ANFLVTKLE 26
               L +KLE
Sbjct: 1458 NMVLKSKLE 1466


>01_05_0011 +
           17133501-17133738,17135335-17135607,17145224-17145348,
           17145463-17145612,17145653-17145696,17145822-17146174,
           17146280-17146602,17147010-17147105
          Length = 533

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 18/56 (32%), Positives = 27/56 (48%)
 Frame = +3

Query: 375 KKFFIKLDILTSTYYQSIELVFLFKIASSACSISNFFRTLLAL*LGMSSTLDSVFL 542
           KK  + L +L    + ++ L+F F +   A SIS FF   ++L L     L  V L
Sbjct: 99  KKSNLFLQVLIDFIHFALALIFNFGLEGEASSISFFFNLYMSLVLIFPKRLAGVIL 154


>01_05_0297 -
           20578031-20578080,20578162-20578236,20578317-20578416,
           20578476-20578535,20578833-20578907,20578989-20579069,
           20579596-20579665,20579769-20579833,20580008-20580116,
           20580812-20580876,20580964-20581023,20582008-20582134,
           20582215-20582315,20583209-20583316,20583429-20583464,
           20583569-20583714,20585555-20585564
          Length = 445

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 11/29 (37%), Positives = 15/29 (51%)
 Frame = +2

Query: 551 GRADDDNEHEKQYEQIQKRCCFPFXHTLN 637
           G+A    E+E     IQ  CC P+ +T N
Sbjct: 342 GKASSSKENEGSSVSIQVACCDPYFNTFN 370


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,669,728
Number of Sequences: 37544
Number of extensions: 225811
Number of successful extensions: 550
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 543
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 550
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1632177336
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)