Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc15l03
(669 letters)
Database: fruitfly
53,049 sequences; 24,988,368 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AE014134-2469|AAS64704.1| 1853|Drosophila melanogaster CG32972-P... 32 0.61
AE013599-545|AAF59166.2| 922|Drosophila melanogaster CG14766-PA... 32 0.81
AE014298-1416|AAF46559.1| 1161|Drosophila melanogaster CG15311-P... 31 1.4
AY928610-1|AAX28843.1| 377|Drosophila melanogaster gag protein ... 29 7.6
AJ001516-2|CAC79667.1| 373|Drosophila melanogaster gag protein ... 29 7.6
AY118849-1|AAM50709.1| 880|Drosophila melanogaster GM15606p pro... 28 10.0
AY069226-1|AAL39371.1| 571|Drosophila melanogaster GH27293p pro... 28 10.0
AE014296-3425|AAF51645.2| 926|Drosophila melanogaster CG3680-PA... 28 10.0
AE014296-3423|AAF51643.2| 1959|Drosophila melanogaster CG11451-P... 28 10.0
AE014134-2139|AAF53150.1| 571|Drosophila melanogaster CG6785-PA... 28 10.0
>AE014134-2469|AAS64704.1| 1853|Drosophila melanogaster CG32972-PA,
isoform A protein.
Length = 1853
Score = 32.3 bits (70), Expect = 0.61
Identities = 22/71 (30%), Positives = 31/71 (43%), Gaps = 1/71 (1%)
Frame = -1
Query: 234 SSIYDEVLTRDFITKNMAKFKTVALKLPV-APSTTEYVPTSISGSKKRKNSVPAKQRSSI 58
+SI D T+D T + LK AP+TT+ +PT+ + K SS
Sbjct: 1553 TSISDSTTTKDITTTAASPTTAEDLKTTTPAPTTTDNIPTTTNAPTTTKEITTTTSASS- 1611
Query: 57 KNRRNTTAAPT 25
+ TT APT
Sbjct: 1612 TDETTTTTAPT 1622
>AE013599-545|AAF59166.2| 922|Drosophila melanogaster CG14766-PA
protein.
Length = 922
Score = 31.9 bits (69), Expect = 0.81
Identities = 19/70 (27%), Positives = 32/70 (45%), Gaps = 2/70 (2%)
Frame = -1
Query: 381 PASKKRQTAVLTNANLA--ELKESCEMRDKLYSEFYSLLNETFNNNVAPLLSSIYDEVLT 208
P S+KR+ +T N + E K LYS + +++ET N +PL Y L
Sbjct: 827 PVSEKRELISITKPNQSDCEAKHRSHKDVNLYSRYPKIISETLENLTSPLRFENYTRELL 886
Query: 207 RDFITKNMAK 178
+ + ++ K
Sbjct: 887 KAYKALDVTK 896
>AE014298-1416|AAF46559.1| 1161|Drosophila melanogaster CG15311-PA
protein.
Length = 1161
Score = 31.1 bits (67), Expect = 1.4
Identities = 16/48 (33%), Positives = 25/48 (52%)
Frame = -1
Query: 168 VALKLPVAPSTTEYVPTSISGSKKRKNSVPAKQRSSIKNRRNTTAAPT 25
+A K PVA STT VPT+++ SK S + ++ T +P+
Sbjct: 340 LAKKYPVATSTTTKVPTTLATSKTTSRSSSSSTTTTTMATSTTATSPS 387
>AY928610-1|AAX28843.1| 377|Drosophila melanogaster gag protein
protein.
Length = 377
Score = 28.7 bits (61), Expect = 7.6
Identities = 21/59 (35%), Positives = 30/59 (50%), Gaps = 2/59 (3%)
Frame = -1
Query: 300 KLYSEFYSLL-NETFNNNVAPLLSSIYDEVLTRDFITKNMAKFKT-VALKLPVAPSTTE 130
K+ S+ +S+L N NN V +Y+EV F+T KT V +K +PST E
Sbjct: 197 KVRSQLFSILKNSEHNNTVVDAKKVVYNEVCLNAFMTGLKEPLKTFVRIK---SPSTLE 252
>AJ001516-2|CAC79667.1| 373|Drosophila melanogaster gag protein
protein.
Length = 373
Score = 28.7 bits (61), Expect = 7.6
Identities = 21/59 (35%), Positives = 30/59 (50%), Gaps = 2/59 (3%)
Frame = -1
Query: 300 KLYSEFYSLL-NETFNNNVAPLLSSIYDEVLTRDFITKNMAKFKT-VALKLPVAPSTTE 130
K+ S+ +S+L N NN V +Y+EV F+T KT V +K +PST E
Sbjct: 197 KVRSQLFSILKNSEHNNTVVDAKKVVYNEVCLNAFMTGLKEPLKTFVRIK---SPSTLE 252
>AY118849-1|AAM50709.1| 880|Drosophila melanogaster GM15606p
protein.
Length = 880
Score = 28.3 bits (60), Expect = 10.0
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = -1
Query: 621 ERKMSKRKKKVINNNKYILFNSWYTK 544
E + K KKK+ N+ Y L N W+T+
Sbjct: 42 EHRKPKTKKKISTNSYYELANLWHTR 67
>AY069226-1|AAL39371.1| 571|Drosophila melanogaster GH27293p
protein.
Length = 571
Score = 28.3 bits (60), Expect = 10.0
Identities = 13/32 (40%), Positives = 16/32 (50%)
Frame = -1
Query: 123 PTSISGSKKRKNSVPAKQRSSIKNRRNTTAAP 28
P I G+KK +N PA + TTAAP
Sbjct: 333 PPRIEGNKKNQNKRPATTTTKATTTTTTTAAP 364
>AE014296-3425|AAF51645.2| 926|Drosophila melanogaster CG3680-PA
protein.
Length = 926
Score = 28.3 bits (60), Expect = 10.0
Identities = 17/53 (32%), Positives = 27/53 (50%)
Frame = -1
Query: 192 KNMAKFKTVALKLPVAPSTTEYVPTSISGSKKRKNSVPAKQRSSIKNRRNTTA 34
K+ A++ + P AP+T + SIS + K V K+RS+ R+T A
Sbjct: 398 KSFAQYASTKAACP-APTTPKTTVKSISPTTTTKKEVAPKKRSATPTARSTKA 449
>AE014296-3423|AAF51643.2| 1959|Drosophila melanogaster CG11451-PA
protein.
Length = 1959
Score = 28.3 bits (60), Expect = 10.0
Identities = 15/42 (35%), Positives = 22/42 (52%)
Frame = -1
Query: 147 APSTTEYVPTSISGSKKRKNSVPAKQRSSIKNRRNTTAAPTL 22
AP T Y PT S + ++S+ + R S KN+ T A +L
Sbjct: 227 APVATLYPPTQQSLMELEEDSIVREMRESTKNQTKTPAQKSL 268
>AE014134-2139|AAF53150.1| 571|Drosophila melanogaster CG6785-PA
protein.
Length = 571
Score = 28.3 bits (60), Expect = 10.0
Identities = 13/32 (40%), Positives = 16/32 (50%)
Frame = -1
Query: 123 PTSISGSKKRKNSVPAKQRSSIKNRRNTTAAP 28
P I G+KK +N PA + TTAAP
Sbjct: 333 PPRIEGNKKNQNKRPATTTTKATTTTTTTAAP 364
Database: fruitfly
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 24,988,368
Number of sequences in database: 53,049
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 29,117,908
Number of Sequences: 53049
Number of extensions: 605737
Number of successful extensions: 2056
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1967
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2044
length of database: 24,988,368
effective HSP length: 82
effective length of database: 20,638,350
effective search space used: 2889369000
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -