Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc15l02
         (690 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_01_1087 + 8901950-8902102,8902960-8903996,8904438-8904586,890...    30   2.0  
02_04_0071 + 19457502-19458092,19458558-19458723,19458816-194590...    30   2.0  

>06_01_1087 + 8901950-8902102,8902960-8903996,8904438-8904586,
            8905437-8905690,8905785-8908799,8908889-8909001,
            8909975-8910164,8910399-8910512,8910591-8910698,
            8910941-8911073,8911206-8911408,8911626-8911826
          Length = 1889

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 16/56 (28%), Positives = 34/56 (60%), Gaps = 2/56 (3%)
 Frame = -1

Query: 567  NQQQGAKPKSNKPVGTTIETTTNESQA*TS--RGRYVWHIIYVVHVDSSCVTLHLN 406
            ++Q+ A+ K+ K VG +  TT+ + +  +S  R   +    +++H+  SCV++HL+
Sbjct: 839  HEQKIAQNKNGKWVGVSSSTTSEDLEESSSSIRRELLRSTEFLLHIKLSCVSVHLS 894


>02_04_0071 +
           19457502-19458092,19458558-19458723,19458816-19459027,
           19460103-19460596,19460682-19460730,19460886-19461194
          Length = 606

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 16/35 (45%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
 Frame = +3

Query: 585 HLHPGHFGAE-PDFVLPAPAGKLRGRTRRNPSSIH 686
           H  PG F A  P   LP  A   RGR RR+ +S+H
Sbjct: 9   HSMPGAFAAHSPASNLPLAADAARGRRRRSANSLH 43


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,364,145
Number of Sequences: 37544
Number of extensions: 378065
Number of successful extensions: 845
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 826
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 845
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1756684372
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)