Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc15k24
         (705 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC24C6.06 |gpa1||G-protein alpha subunit |Schizosaccharomyces ...    26   4.6  
SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein Ubr1|Sc...    25   8.0  
SPAPB1E7.05 |gde1||glycerophosphoryl diester phosphodiesterase G...    25   8.0  
SPBC16A3.02c |||mitochondrial peptidase |Schizosaccharomyces pom...    25   8.0  

>SPBC24C6.06 |gpa1||G-protein alpha subunit |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 407

 Score = 26.2 bits (55), Expect = 4.6
 Identities = 11/45 (24%), Positives = 22/45 (48%)
 Frame = +3

Query: 567 SNRTRLLHSRKHNTNAGQNFCINLYKRVFTIIVDGHVRVWEKCTT 701
           + + R +  RKH +   + F   +Y+ V  + +D  +R  + C T
Sbjct: 140 NEKYRAVILRKHTSQPNEPFSPEIYEAVHALTLDTKLRTVQSCGT 184


>SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein
           Ubr1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1958

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 12/43 (27%), Positives = 23/43 (53%)
 Frame = -2

Query: 560 HDVTITVDSRFYVSHSTTYWPKKKFNFNNYIDQNMLLEKATTA 432
           +D   T+++  Y     T++  KK N  NY+DQ+ ++   + A
Sbjct: 524 YDFLTTINATLY-----TFFTYKKLNTPNYVDQHAMIRTDSAA 561


>SPAPB1E7.05 |gde1||glycerophosphoryl diester phosphodiesterase
           Gde1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1076

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 14/57 (24%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
 Frame = -2

Query: 434 ASFIQTVDNFTRPVLLQLFNKFHI-EDYTSASQHSFHQSKIYTNSATPDEDSQDDSN 267
           AS+++     T+ ++  +++ F + E  T A  HS    +    S +P E+ +DD++
Sbjct: 783 ASYVELDVQMTKDMVPVVYHDFIVNETGTDAQVHSLTLEQFLGASHSPSEEIKDDAS 839


>SPBC16A3.02c |||mitochondrial peptidase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 347

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 13/32 (40%), Positives = 22/32 (68%), Gaps = 1/32 (3%)
 Frame = +1

Query: 22  SFNKSNGFGISSLSSYS-LVKLMYARLFSKLL 114
           SFN+  GFGI+ L+++  LV+ M  +  +KL+
Sbjct: 139 SFNEGAGFGIAGLTAWEVLVRQMKVKPGTKLV 170


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,748,535
Number of Sequences: 5004
Number of extensions: 54020
Number of successful extensions: 140
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 136
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 140
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 327172622
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)