Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc15k24
         (705 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protei...    25   0.53 
AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex det...    25   0.70 
DQ325080-1|ABD14094.1|  184|Apis mellifera complementary sex det...    23   2.1  
DQ325079-1|ABD14093.1|  184|Apis mellifera complementary sex det...    23   2.1  
DQ325078-1|ABD14092.1|  184|Apis mellifera complementary sex det...    23   2.1  
AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.    23   2.1  
AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter...    23   3.7  
AF388659-3|AAK71993.1|  548|Apis mellifera 1D-myo-inositol-trisp...    21   8.6  
AF388659-2|AAK71994.1|  463|Apis mellifera 1D-myo-inositol-trisp...    21   8.6  
AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    21   8.6  

>AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protein
           kinase foraging protein.
          Length = 678

 Score = 25.4 bits (53), Expect = 0.53
 Identities = 14/51 (27%), Positives = 19/51 (37%)
 Frame = -3

Query: 535 RDFMSAIQLHTGLKRNLILTTTSTKICCLKKQPPPVLYRLLTILPVLFYCN 383
           R     I + TGL R    T     +   K  P   L ++  +L   FY N
Sbjct: 193 RQCFQTIMMRTGLSRQAEYTDFLKSVPIFKNLPEETLIKISDVLEETFYNN 243


>AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex
           determiner protein.
          Length = 428

 Score = 25.0 bits (52), Expect = 0.70
 Identities = 14/40 (35%), Positives = 18/40 (45%), Gaps = 3/40 (7%)
 Frame = -2

Query: 182 KRCHQSNNVTVQYKNNDEFVTICNNLENN---RAYINLTN 72
           K  H +NN    Y NN+      NN  NN   + Y N+ N
Sbjct: 321 KTIHNNNNYKYNYNNNNYNNNNYNNNYNNNCKKLYYNIIN 360


>DQ325080-1|ABD14094.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 23.4 bits (48), Expect = 2.1
 Identities = 12/33 (36%), Positives = 15/33 (45%)
 Frame = -2

Query: 182 KRCHQSNNVTVQYKNNDEFVTICNNLENNRAYI 84
           K  H +NN    Y NN+ +   C  L  N  YI
Sbjct: 88  KTIHNNNNYKYNY-NNNNYNNNCKKLYYNINYI 119


>DQ325079-1|ABD14093.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 23.4 bits (48), Expect = 2.1
 Identities = 12/33 (36%), Positives = 15/33 (45%)
 Frame = -2

Query: 182 KRCHQSNNVTVQYKNNDEFVTICNNLENNRAYI 84
           K  H +NN    Y NN+ +   C  L  N  YI
Sbjct: 88  KTIHNNNNYKYNY-NNNNYNNNCKKLYYNINYI 119


>DQ325078-1|ABD14092.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 23.4 bits (48), Expect = 2.1
 Identities = 12/33 (36%), Positives = 15/33 (45%)
 Frame = -2

Query: 182 KRCHQSNNVTVQYKNNDEFVTICNNLENNRAYI 84
           K  H +NN    Y NN+ +   C  L  N  YI
Sbjct: 88  KTIHNNNNYKYNY-NNNNYNNNCKKLYYNINYI 119


>AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.
          Length = 615

 Score = 23.4 bits (48), Expect = 2.1
 Identities = 16/53 (30%), Positives = 27/53 (50%)
 Frame = +1

Query: 1   GYNRGLSSFNKSNGFGISSLSSYSLVKLMYARLFSKLLQIVTNSSLFLYCTVT 159
           G +  LS  ++ NGF ++   S + V+L  AR F    +  +N  + +  TVT
Sbjct: 237 GVSEDLSG-DRINGFTVAQTISRNGVRLSSARAFITPFENRSNLHVIVNATVT 288


>AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter
           transporter-1A protein.
          Length = 203

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 10/25 (40%), Positives = 12/25 (48%)
 Frame = +3

Query: 423 YKTGGGCFFKQHILVDVVVKIKFLF 497
           YK GGG F   + L  V+  I   F
Sbjct: 12  YKNGGGAFLIPYFLTLVLAGIPMFF 36


>AF388659-3|AAK71993.1|  548|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform C protein.
          Length = 548

 Score = 21.4 bits (43), Expect = 8.6
 Identities = 7/15 (46%), Positives = 10/15 (66%)
 Frame = -3

Query: 634 LIQKFCPALVLCFRL 590
           +++K CP    CFRL
Sbjct: 261 ILKKLCPQEEACFRL 275


>AF388659-2|AAK71994.1|  463|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform B protein.
          Length = 463

 Score = 21.4 bits (43), Expect = 8.6
 Identities = 7/15 (46%), Positives = 10/15 (66%)
 Frame = -3

Query: 634 LIQKFCPALVLCFRL 590
           +++K CP    CFRL
Sbjct: 176 ILKKLCPQEEACFRL 190


>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 21.4 bits (43), Expect = 8.6
 Identities = 7/15 (46%), Positives = 10/15 (66%)
 Frame = -3

Query: 634 LIQKFCPALVLCFRL 590
           +++K CP    CFRL
Sbjct: 495 ILKKLCPQEEACFRL 509


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 188,044
Number of Sequences: 438
Number of extensions: 4110
Number of successful extensions: 15
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21683070
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)