Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc15k22
         (482 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_04_0216 - 15727044-15727124,15728557-15728607,15728695-157287...   109   9e-25
06_01_1193 + 10264360-10264504,10264763-10264910,10268350-102687...    27   6.0  
12_02_0058 + 13015401-13016654                                         27   7.9  
04_03_0776 - 19463473-19464252,19464354-19464849,19465460-19465911     27   7.9  

>09_04_0216 -
           15727044-15727124,15728557-15728607,15728695-15728752,
           15729336-15729398,15729740-15729804,15729901-15730038
          Length = 151

 Score =  109 bits (263), Expect = 9e-25
 Identities = 51/103 (49%), Positives = 72/103 (69%)
 Frame = -1

Query: 311 LGDFLLQLENYNPSIPDSVVAYYLNLTGFESQDPRLVRLIALASQKFLSDIVNDALQHCK 132
           L +FL  L +Y P+IPD +V +YL  +GF   D RL RL+A+A+QKF+SDI +D+LQHCK
Sbjct: 33  LTEFLSSLMDYTPTIPDELVEHYLGRSGFYCPDLRLTRLVAVATQKFISDIASDSLQHCK 92

Query: 131 MRTSNQINQSSKNQKGPKEKKYVMTMDDLAPALQEYGITAKKP 3
            R +  I  +   Q  PK+++ V+TMDDL+ ALQE+G+  K P
Sbjct: 93  ARVAAPIKDNKSKQ--PKDRRLVLTMDDLSKALQEHGVNLKHP 133


>06_01_1193 +
           10264360-10264504,10264763-10264910,10268350-10268748,
           10268925-10271214
          Length = 993

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 20/65 (30%), Positives = 32/65 (49%), Gaps = 1/65 (1%)
 Frame = -1

Query: 236 LTGFESQDPRLVRLIALASQKFLSDIVNDALQHCKMRTSNQI-NQSSKNQKGPKEKKYVM 60
           L GF     R+  L  +  Q   S+ ++  LQ  + +   QI + S   +K  KEK+Y +
Sbjct: 222 LVGFSDSKIRIELLKDMIRQFLGSNSLDQVLQELQGKMVVQIPHLSDYLRKKLKEKRYFV 281

Query: 59  TMDDL 45
            +DDL
Sbjct: 282 VLDDL 286


>12_02_0058 + 13015401-13016654
          Length = 417

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 14/23 (60%), Positives = 17/23 (73%), Gaps = 1/23 (4%)
 Frame = -1

Query: 305 DFLLQLE-NYNPSIPDSVVAYYL 240
           DFLL+L   +NPS P+ VV YYL
Sbjct: 7   DFLLELGFRFNPS-PEQVVTYYL 28


>04_03_0776 - 19463473-19464252,19464354-19464849,19465460-19465911
          Length = 575

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 10/45 (22%), Positives = 22/45 (48%)
 Frame = -1

Query: 212 PRLVRLIALASQKFLSDIVNDALQHCKMRTSNQINQSSKNQKGPK 78
           PR   L+ ++ + F +D +     HCK+     + ++    +GP+
Sbjct: 125 PRFRALVLISCEGFSTDGLAAVASHCKLLRELDLQENEVEDRGPR 169


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,687,972
Number of Sequences: 37544
Number of extensions: 219160
Number of successful extensions: 609
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 599
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 608
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 987904180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)