Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc15k22
         (482 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U25816-1|AAB61242.1|  218|Homo sapiens TATA-binding protein asso...   136   5e-32
U13991-1|AAA62230.1|  218|Homo sapiens TATA-binding protein asso...   136   5e-32
CR541943-1|CAG46741.1|  218|Homo sapiens TAF10 protein.               136   5e-32
BC012088-1|AAH12088.1|  218|Homo sapiens TAF10 RNA polymerase II...   136   5e-32
AF498312-1|AAM14627.1|  218|Homo sapiens TAF10 RNA polymerase II...   136   5e-32
BC146806-1|AAI46807.1| 1225|Homo sapiens stromal antigen 3 protein.    29   8.6  
AK023257-1|BAB14491.1|  150|Homo sapiens protein ( Homo sapiens ...    29   8.6  
AJ007798-1|CAB59367.1| 1225|Homo sapiens stromal antigen 3, (STA...    29   8.6  

>U25816-1|AAB61242.1|  218|Homo sapiens TATA-binding protein
           associated factor 30 kDa subunit protein.
          Length = 218

 Score =  136 bits (328), Expect = 5e-32
 Identities = 62/103 (60%), Positives = 80/103 (77%)
 Frame = -1

Query: 311 LGDFLLQLENYNPSIPDSVVAYYLNLTGFESQDPRLVRLIALASQKFLSDIVNDALQHCK 132
           L DFL+QLE+Y P+IPD+V  YYLN  GFE+ DPR++RLI+LA+QKF+SDI NDALQHCK
Sbjct: 116 LVDFLMQLEDYTPTIPDAVTGYYLNRAGFEASDPRIIRLISLAAQKFISDIANDALQHCK 175

Query: 131 MRTSNQINQSSKNQKGPKEKKYVMTMDDLAPALQEYGITAKKP 3
           M+ +   +  SK+    K++KY +TM+DL PAL EYGI  KKP
Sbjct: 176 MKGTASGSSRSKS----KDRKYTLTMEDLTPALSEYGINVKKP 214


>U13991-1|AAA62230.1|  218|Homo sapiens TATA-binding protein
           associated factor 30 kDa subunit protein.
          Length = 218

 Score =  136 bits (328), Expect = 5e-32
 Identities = 62/103 (60%), Positives = 80/103 (77%)
 Frame = -1

Query: 311 LGDFLLQLENYNPSIPDSVVAYYLNLTGFESQDPRLVRLIALASQKFLSDIVNDALQHCK 132
           L DFL+QLE+Y P+IPD+V  YYLN  GFE+ DPR++RLI+LA+QKF+SDI NDALQHCK
Sbjct: 116 LVDFLMQLEDYTPTIPDAVTGYYLNRAGFEASDPRIIRLISLAAQKFISDIANDALQHCK 175

Query: 131 MRTSNQINQSSKNQKGPKEKKYVMTMDDLAPALQEYGITAKKP 3
           M+ +   +  SK+    K++KY +TM+DL PAL EYGI  KKP
Sbjct: 176 MKGTASGSSRSKS----KDRKYTLTMEDLTPALSEYGINVKKP 214


>CR541943-1|CAG46741.1|  218|Homo sapiens TAF10 protein.
          Length = 218

 Score =  136 bits (328), Expect = 5e-32
 Identities = 62/103 (60%), Positives = 80/103 (77%)
 Frame = -1

Query: 311 LGDFLLQLENYNPSIPDSVVAYYLNLTGFESQDPRLVRLIALASQKFLSDIVNDALQHCK 132
           L DFL+QLE+Y P+IPD+V  YYLN  GFE+ DPR++RLI+LA+QKF+SDI NDALQHCK
Sbjct: 116 LVDFLMQLEDYTPTIPDAVTGYYLNRAGFEASDPRIIRLISLAAQKFISDIANDALQHCK 175

Query: 131 MRTSNQINQSSKNQKGPKEKKYVMTMDDLAPALQEYGITAKKP 3
           M+ +   +  SK+    K++KY +TM+DL PAL EYGI  KKP
Sbjct: 176 MKGTASGSSRSKS----KDRKYTLTMEDLTPALSEYGINVKKP 214


>BC012088-1|AAH12088.1|  218|Homo sapiens TAF10 RNA polymerase II,
           TATA box binding protein (TBP)-associated factor, 30kD
           protein.
          Length = 218

 Score =  136 bits (328), Expect = 5e-32
 Identities = 62/103 (60%), Positives = 80/103 (77%)
 Frame = -1

Query: 311 LGDFLLQLENYNPSIPDSVVAYYLNLTGFESQDPRLVRLIALASQKFLSDIVNDALQHCK 132
           L DFL+QLE+Y P+IPD+V  YYLN  GFE+ DPR++RLI+LA+QKF+SDI NDALQHCK
Sbjct: 116 LVDFLMQLEDYTPTIPDAVTGYYLNRAGFEASDPRIIRLISLAAQKFISDIANDALQHCK 175

Query: 131 MRTSNQINQSSKNQKGPKEKKYVMTMDDLAPALQEYGITAKKP 3
           M+ +   +  SK+    K++KY +TM+DL PAL EYGI  KKP
Sbjct: 176 MKGTASGSSRSKS----KDRKYTLTMEDLTPALSEYGINVKKP 214


>AF498312-1|AAM14627.1|  218|Homo sapiens TAF10 RNA polymerase II,
           TATA box binding protein (TBP)-associated factor, 30 k
           protein.
          Length = 218

 Score =  136 bits (328), Expect = 5e-32
 Identities = 62/103 (60%), Positives = 80/103 (77%)
 Frame = -1

Query: 311 LGDFLLQLENYNPSIPDSVVAYYLNLTGFESQDPRLVRLIALASQKFLSDIVNDALQHCK 132
           L DFL+QLE+Y P+IPD+V  YYLN  GFE+ DPR++RLI+LA+QKF+SDI NDALQHCK
Sbjct: 116 LVDFLMQLEDYTPTIPDAVTGYYLNRAGFEASDPRIIRLISLAAQKFISDIANDALQHCK 175

Query: 131 MRTSNQINQSSKNQKGPKEKKYVMTMDDLAPALQEYGITAKKP 3
           M+ +   +  SK+    K++KY +TM+DL PAL EYGI  KKP
Sbjct: 176 MKGTASGSSRSKS----KDRKYTLTMEDLTPALSEYGINVKKP 214


>BC146806-1|AAI46807.1| 1225|Homo sapiens stromal antigen 3 protein.
          Length = 1225

 Score = 29.1 bits (62), Expect = 8.6
 Identities = 17/56 (30%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
 Frame = -1

Query: 236 LTGFESQDPRLVRLIA-LASQKFLSDIVNDALQHCKMRTSNQINQSSKNQKGPKEK 72
           LTG      R  R  + LA+ K ++ +V  ALQ    + +NQ    ++  KGP ++
Sbjct: 220 LTGLSDSQVRAFRHTSTLAAMKLMTSLVKVALQLSVHQDNNQRQYEAERNKGPGQR 275


>AK023257-1|BAB14491.1|  150|Homo sapiens protein ( Homo sapiens
           cDNA FLJ13195 fis, clone NT2RP3004424, weakly similar to
           Homo sapiens mRNA for stromal antigen 3 (STAG3 gene). ).
          Length = 150

 Score = 29.1 bits (62), Expect = 8.6
 Identities = 18/56 (32%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
 Frame = -1

Query: 236 LTGF-ESQDPRLVRLIALASQKFLSDIVNDALQHCKMRTSNQINQSSKNQKGPKEK 72
           LTGF +SQ         LA+ K ++ +V  ALQ    +  NQ    ++  KGP ++
Sbjct: 79  LTGFSDSQVCAFCHTSTLAAMKLMTSLVRVALQLSLHQDINQRQYEAERNKGPGQR 134


>AJ007798-1|CAB59367.1| 1225|Homo sapiens stromal antigen 3, (STAG3)
           protein.
          Length = 1225

 Score = 29.1 bits (62), Expect = 8.6
 Identities = 17/56 (30%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
 Frame = -1

Query: 236 LTGFESQDPRLVRLIA-LASQKFLSDIVNDALQHCKMRTSNQINQSSKNQKGPKEK 72
           LTG      R  R  + LA+ K ++ +V  ALQ    + +NQ    ++  KGP ++
Sbjct: 220 LTGLSDSQVRAFRHTSTLAAMKLMTSLVKVALQLSVHQDNNQRQYEAERNKGPGQR 275


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 63,741,573
Number of Sequences: 237096
Number of extensions: 1171606
Number of successful extensions: 2719
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 2640
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2714
length of database: 76,859,062
effective HSP length: 84
effective length of database: 56,942,998
effective search space used: 4327667848
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)