Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc15k22
(482 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U55370-5|AAA97996.1| 176|Caenorhabditis elegans Taf (tbp-associ... 79 1e-15
U55370-4|AAK82906.1| 179|Caenorhabditis elegans Taf (tbp-associ... 79 1e-15
U40417-13|AAA81420.1| 1330|Caenorhabditis elegans Hypothetical p... 30 1.0
Z92779-4|CAE11294.1| 1816|Caenorhabditis elegans Hypothetical pr... 29 1.8
Z92779-3|CAD90173.2| 2155|Caenorhabditis elegans Hypothetical pr... 29 1.8
Z92779-1|CAB07173.1| 1813|Caenorhabditis elegans Hypothetical pr... 29 1.8
Z79694-11|CAE11299.1| 1816|Caenorhabditis elegans Hypothetical p... 29 1.8
Z79694-10|CAD90170.2| 2155|Caenorhabditis elegans Hypothetical p... 29 1.8
Z79694-9|CAB01966.1| 1813|Caenorhabditis elegans Hypothetical pr... 29 1.8
Z73912-7|CAE11317.1| 1816|Caenorhabditis elegans Hypothetical pr... 29 1.8
Z73912-6|CAD90190.2| 2155|Caenorhabditis elegans Hypothetical pr... 29 1.8
Z73912-4|CAA98147.1| 1813|Caenorhabditis elegans Hypothetical pr... 29 1.8
U50735-1|AAA99780.1| 66|Caenorhabditis elegans unc-13 protein. 29 1.8
M62830-1|AAA93094.1| 1815|Caenorhabditis elegans UNC-13 protein. 29 1.8
Z81475-11|CAB03915.1| 1820|Caenorhabditis elegans Hypothetical p... 28 3.1
AL032627-23|CAA21551.1| 1820|Caenorhabditis elegans Hypothetical... 28 3.1
AF067222-2|AAC17018.2| 458|Caenorhabditis elegans Hypothetical ... 27 7.1
Z74042-4|CAA98533.1| 265|Caenorhabditis elegans Hypothetical pr... 27 9.4
Z73969-20|CAA98241.1| 643|Caenorhabditis elegans Hypothetical p... 27 9.4
U40421-5|AAA81441.1| 133|Caenorhabditis elegans Hypothetical pr... 27 9.4
U21487-1|AAA96949.1| 643|Caenorhabditis elegans ribonucleoprote... 27 9.4
L41729-1|AAC41575.1| 643|Caenorhabditis elegans Ro ribonucleopr... 27 9.4
AL021479-8|CAA16325.1| 643|Caenorhabditis elegans Hypothetical ... 27 9.4
AJ561211-1|CAD99213.1| 82|Caenorhabditis elegans NAS-21 protei... 27 9.4
>U55370-5|AAA97996.1| 176|Caenorhabditis elegans Taf
(tbp-associated transcriptionfactor) family protein 10,
isoform a protein.
Length = 176
Score = 79.4 bits (187), Expect = 1e-15
Identities = 40/101 (39%), Positives = 62/101 (61%)
Frame = -1
Query: 305 DFLLQLENYNPSIPDSVVAYYLNLTGFESQDPRLVRLIALASQKFLSDIVNDALQHCKMR 126
+F+ QL +Y P+IPDSV ++L G + DPR+ R+I+LA+QK +SDI+ DA+ +M+
Sbjct: 78 EFINQLADYPPTIPDSVTLHFLKSAGVDGSDPRVTRMISLAAQKHVSDIILDAMTSARMK 137
Query: 125 TSNQINQSSKNQKGPKEKKYVMTMDDLAPALQEYGITAKKP 3
Q +KG K+ KY +T + L L+EYG +P
Sbjct: 138 GLGQ------TKKGTKDTKYTLTEELLDEILKEYGHQNTRP 172
>U55370-4|AAK82906.1| 179|Caenorhabditis elegans Taf
(tbp-associated transcriptionfactor) family protein 10,
isoform b protein.
Length = 179
Score = 79.4 bits (187), Expect = 1e-15
Identities = 40/101 (39%), Positives = 62/101 (61%)
Frame = -1
Query: 305 DFLLQLENYNPSIPDSVVAYYLNLTGFESQDPRLVRLIALASQKFLSDIVNDALQHCKMR 126
+F+ QL +Y P+IPDSV ++L G + DPR+ R+I+LA+QK +SDI+ DA+ +M+
Sbjct: 81 EFINQLADYPPTIPDSVTLHFLKSAGVDGSDPRVTRMISLAAQKHVSDIILDAMTSARMK 140
Query: 125 TSNQINQSSKNQKGPKEKKYVMTMDDLAPALQEYGITAKKP 3
Q +KG K+ KY +T + L L+EYG +P
Sbjct: 141 GLGQ------TKKGTKDTKYTLTEELLDEILKEYGHQNTRP 175
>U40417-13|AAA81420.1| 1330|Caenorhabditis elegans Hypothetical
protein T08A9.1 protein.
Length = 1330
Score = 29.9 bits (64), Expect = 1.0
Identities = 17/41 (41%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
Frame = -1
Query: 308 GDFLLQ-LENYNPSIPDSVVAYYLNLTGFESQDPRLVRLIA 189
GD +LQ LEN P++P + AY+ LT F R IA
Sbjct: 1025 GDQVLQFLENSTPTVPVDMEAYFNELTNFSGSFDEAGRKIA 1065
>Z92779-4|CAE11294.1| 1816|Caenorhabditis elegans Hypothetical
protein ZK524.2e protein.
Length = 1816
Score = 29.1 bits (62), Expect = 1.8
Identities = 13/32 (40%), Positives = 19/32 (59%)
Frame = +1
Query: 346 TDGEPIRLICIALVKISLINAFLTFNNYCNLK 441
+DG +RL+CI + K L A FN+Y +K
Sbjct: 13 SDGMSMRLLCITIKKARLQGAVDEFNSYVTVK 44
>Z92779-3|CAD90173.2| 2155|Caenorhabditis elegans Hypothetical
protein ZK524.2d protein.
Length = 2155
Score = 29.1 bits (62), Expect = 1.8
Identities = 13/32 (40%), Positives = 19/32 (59%)
Frame = +1
Query: 346 TDGEPIRLICIALVKISLINAFLTFNNYCNLK 441
+DG +RL+CI + K L A FN+Y +K
Sbjct: 13 SDGMSMRLLCITIKKARLQGAVDEFNSYVTVK 44
>Z92779-1|CAB07173.1| 1813|Caenorhabditis elegans Hypothetical
protein ZK524.2a protein.
Length = 1813
Score = 29.1 bits (62), Expect = 1.8
Identities = 13/32 (40%), Positives = 19/32 (59%)
Frame = +1
Query: 346 TDGEPIRLICIALVKISLINAFLTFNNYCNLK 441
+DG +RL+CI + K L A FN+Y +K
Sbjct: 13 SDGMSMRLLCITIKKARLQGAVDEFNSYVTVK 44
>Z79694-11|CAE11299.1| 1816|Caenorhabditis elegans Hypothetical
protein ZK524.2e protein.
Length = 1816
Score = 29.1 bits (62), Expect = 1.8
Identities = 13/32 (40%), Positives = 19/32 (59%)
Frame = +1
Query: 346 TDGEPIRLICIALVKISLINAFLTFNNYCNLK 441
+DG +RL+CI + K L A FN+Y +K
Sbjct: 13 SDGMSMRLLCITIKKARLQGAVDEFNSYVTVK 44
>Z79694-10|CAD90170.2| 2155|Caenorhabditis elegans Hypothetical
protein ZK524.2d protein.
Length = 2155
Score = 29.1 bits (62), Expect = 1.8
Identities = 13/32 (40%), Positives = 19/32 (59%)
Frame = +1
Query: 346 TDGEPIRLICIALVKISLINAFLTFNNYCNLK 441
+DG +RL+CI + K L A FN+Y +K
Sbjct: 13 SDGMSMRLLCITIKKARLQGAVDEFNSYVTVK 44
>Z79694-9|CAB01966.1| 1813|Caenorhabditis elegans Hypothetical
protein ZK524.2a protein.
Length = 1813
Score = 29.1 bits (62), Expect = 1.8
Identities = 13/32 (40%), Positives = 19/32 (59%)
Frame = +1
Query: 346 TDGEPIRLICIALVKISLINAFLTFNNYCNLK 441
+DG +RL+CI + K L A FN+Y +K
Sbjct: 13 SDGMSMRLLCITIKKARLQGAVDEFNSYVTVK 44
>Z73912-7|CAE11317.1| 1816|Caenorhabditis elegans Hypothetical
protein ZK524.2e protein.
Length = 1816
Score = 29.1 bits (62), Expect = 1.8
Identities = 13/32 (40%), Positives = 19/32 (59%)
Frame = +1
Query: 346 TDGEPIRLICIALVKISLINAFLTFNNYCNLK 441
+DG +RL+CI + K L A FN+Y +K
Sbjct: 13 SDGMSMRLLCITIKKARLQGAVDEFNSYVTVK 44
>Z73912-6|CAD90190.2| 2155|Caenorhabditis elegans Hypothetical
protein ZK524.2d protein.
Length = 2155
Score = 29.1 bits (62), Expect = 1.8
Identities = 13/32 (40%), Positives = 19/32 (59%)
Frame = +1
Query: 346 TDGEPIRLICIALVKISLINAFLTFNNYCNLK 441
+DG +RL+CI + K L A FN+Y +K
Sbjct: 13 SDGMSMRLLCITIKKARLQGAVDEFNSYVTVK 44
>Z73912-4|CAA98147.1| 1813|Caenorhabditis elegans Hypothetical
protein ZK524.2a protein.
Length = 1813
Score = 29.1 bits (62), Expect = 1.8
Identities = 13/32 (40%), Positives = 19/32 (59%)
Frame = +1
Query: 346 TDGEPIRLICIALVKISLINAFLTFNNYCNLK 441
+DG +RL+CI + K L A FN+Y +K
Sbjct: 13 SDGMSMRLLCITIKKARLQGAVDEFNSYVTVK 44
>U50735-1|AAA99780.1| 66|Caenorhabditis elegans unc-13 protein.
Length = 66
Score = 29.1 bits (62), Expect = 1.8
Identities = 13/32 (40%), Positives = 19/32 (59%)
Frame = +1
Query: 346 TDGEPIRLICIALVKISLINAFLTFNNYCNLK 441
+DG +RL+CI + K L A FN+Y +K
Sbjct: 13 SDGMSMRLLCITIKKARLQGAVDEFNSYVTVK 44
>M62830-1|AAA93094.1| 1815|Caenorhabditis elegans UNC-13 protein.
Length = 1815
Score = 29.1 bits (62), Expect = 1.8
Identities = 13/32 (40%), Positives = 19/32 (59%)
Frame = +1
Query: 346 TDGEPIRLICIALVKISLINAFLTFNNYCNLK 441
+DG +RL+CI + K L A FN+Y +K
Sbjct: 13 SDGMSMRLLCITIKKARLQGAVDEFNSYVTVK 44
>Z81475-11|CAB03915.1| 1820|Caenorhabditis elegans Hypothetical
protein C24H11.7 protein.
Length = 1820
Score = 28.3 bits (60), Expect = 3.1
Identities = 16/68 (23%), Positives = 36/68 (52%), Gaps = 2/68 (2%)
Frame = -1
Query: 284 NYNPSIPDSV--VAYYLNLTGFESQDPRLVRLIALASQKFLSDIVNDALQHCKMRTSNQI 111
N N ++P+S+ + ++ TG + PRL + KF+ +++ D + + R Q
Sbjct: 1685 NLNEAVPESLKNMLLVMDSTGIFAATPRLYDVTVERLNKFMPELIKDTIPN-PPRPGQQQ 1743
Query: 110 NQSSKNQK 87
+++S+ +K
Sbjct: 1744 SEASEPKK 1751
>AL032627-23|CAA21551.1| 1820|Caenorhabditis elegans Hypothetical
protein C24H11.7 protein.
Length = 1820
Score = 28.3 bits (60), Expect = 3.1
Identities = 16/68 (23%), Positives = 36/68 (52%), Gaps = 2/68 (2%)
Frame = -1
Query: 284 NYNPSIPDSV--VAYYLNLTGFESQDPRLVRLIALASQKFLSDIVNDALQHCKMRTSNQI 111
N N ++P+S+ + ++ TG + PRL + KF+ +++ D + + R Q
Sbjct: 1685 NLNEAVPESLKNMLLVMDSTGIFAATPRLYDVTVERLNKFMPELIKDTIPN-PPRPGQQQ 1743
Query: 110 NQSSKNQK 87
+++S+ +K
Sbjct: 1744 SEASEPKK 1751
>AF067222-2|AAC17018.2| 458|Caenorhabditis elegans Hypothetical
protein H11E01.2 protein.
Length = 458
Score = 27.1 bits (57), Expect = 7.1
Identities = 18/70 (25%), Positives = 31/70 (44%), Gaps = 2/70 (2%)
Frame = -1
Query: 314 ALGDFLLQ--LENYNPSIPDSVVAYYLNLTGFESQDPRLVRLIALASQKFLSDIVNDALQ 141
A G+ ++ + Y P+ V+ + +N TG+ PR + L SD ++ +
Sbjct: 249 AFGELMMSQFIVMYEPTFLKEVLGFTVNHTGYFVAIPRALHLTFKIISGIASDRISFWTE 308
Query: 140 HCKMRTSNQI 111
KMR N I
Sbjct: 309 KSKMRIFNTI 318
>Z74042-4|CAA98533.1| 265|Caenorhabditis elegans Hypothetical
protein T11F9.5 protein.
Length = 265
Score = 26.6 bits (56), Expect = 9.4
Identities = 11/26 (42%), Positives = 14/26 (53%)
Frame = -1
Query: 101 SKNQKGPKEKKYVMTMDDLAPALQEY 24
S N+ GPK KY TM P+ +Y
Sbjct: 199 SDNEYGPKNSKYFRTMGSQIPSYFDY 224
>Z73969-20|CAA98241.1| 643|Caenorhabditis elegans Hypothetical
protein C12D8.11 protein.
Length = 643
Score = 26.6 bits (56), Expect = 9.4
Identities = 12/33 (36%), Positives = 22/33 (66%)
Frame = -1
Query: 299 LLQLENYNPSIPDSVVAYYLNLTGFESQDPRLV 201
++ ++ Y+ SI D A L++TGF+S P++V
Sbjct: 603 VMAMQAYDYSIADPSDAGMLDITGFDSAVPQIV 635
>U40421-5|AAA81441.1| 133|Caenorhabditis elegans Hypothetical
protein C02B8.3 protein.
Length = 133
Score = 26.6 bits (56), Expect = 9.4
Identities = 21/79 (26%), Positives = 37/79 (46%), Gaps = 3/79 (3%)
Frame = -1
Query: 335 DDGCAGHALGDFLLQLENYNPSIPDSVVAYYLNLTGFESQD-PRLVRLIA--LASQKFLS 165
DD GH + D + QL +Y PS P +++N +S D ++ + A L L+
Sbjct: 24 DDLSKGHTMSDPVYQLCSYMPS-PKDYNKFHVNGVQMDSDDYTTILTMFANQLPGYAVLN 82
Query: 164 DIVNDALQHCKMRTSNQIN 108
+ +A Q K +Q++
Sbjct: 83 VCLQEAFQFHKANHPSQVS 101
>U21487-1|AAA96949.1| 643|Caenorhabditis elegans ribonucleoprotein
Ro autoantigenhomolog protein.
Length = 643
Score = 26.6 bits (56), Expect = 9.4
Identities = 12/33 (36%), Positives = 22/33 (66%)
Frame = -1
Query: 299 LLQLENYNPSIPDSVVAYYLNLTGFESQDPRLV 201
++ ++ Y+ SI D A L++TGF+S P++V
Sbjct: 603 VMAMQAYDYSIADPSDAGMLDITGFDSAVPQIV 635
>L41729-1|AAC41575.1| 643|Caenorhabditis elegans Ro
ribonucleoprotein autoantigen protein.
Length = 643
Score = 26.6 bits (56), Expect = 9.4
Identities = 12/33 (36%), Positives = 22/33 (66%)
Frame = -1
Query: 299 LLQLENYNPSIPDSVVAYYLNLTGFESQDPRLV 201
++ ++ Y+ SI D A L++TGF+S P++V
Sbjct: 603 VMAMQAYDYSIADPSDAGMLDITGFDSAVPQIV 635
>AL021479-8|CAA16325.1| 643|Caenorhabditis elegans Hypothetical
protein C12D8.11 protein.
Length = 643
Score = 26.6 bits (56), Expect = 9.4
Identities = 12/33 (36%), Positives = 22/33 (66%)
Frame = -1
Query: 299 LLQLENYNPSIPDSVVAYYLNLTGFESQDPRLV 201
++ ++ Y+ SI D A L++TGF+S P++V
Sbjct: 603 VMAMQAYDYSIADPSDAGMLDITGFDSAVPQIV 635
>AJ561211-1|CAD99213.1| 82|Caenorhabditis elegans NAS-21 protein
protein.
Length = 82
Score = 26.6 bits (56), Expect = 9.4
Identities = 11/26 (42%), Positives = 14/26 (53%)
Frame = -1
Query: 101 SKNQKGPKEKKYVMTMDDLAPALQEY 24
S N+ GPK KY TM P+ +Y
Sbjct: 43 SDNEYGPKNSKYFRTMGSQIPSYFDY 68
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,450,126
Number of Sequences: 27780
Number of extensions: 200700
Number of successful extensions: 629
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 609
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 627
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 892829112
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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