Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc15k19
(701 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC18.14c |rpp0||60S acidic ribosomal protein Rpp0 |Schizosacch... 250 1e-67
SPBC11G11.03 |||60S acidic ribosomal protein |Schizosaccharomyce... 42 1e-04
SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyce... 30 0.37
SPAC22H12.05c |||fasciclin domain protein |Schizosaccharomyces p... 28 1.1
SPAC3H1.04c |mdm31||mitochondrial inner membrane protein Mdm31|S... 27 2.0
SPCC18.03 |||shuttle craft like transcriptional regulator|Schizo... 27 3.4
SPBC660.16 |||phosphogluconate dehydrogenase, decarboxylating |S... 27 3.4
SPAC6B12.04c |||aminotransferase class I and II|Schizosaccharomy... 26 4.5
SPBC16A3.13 |meu7|aah4|alpha-amylase homolog Aah4|Schizosaccharo... 25 7.9
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 25 7.9
SPAC31G5.12c |maf1|n150|repressor of RNA polymerase III Maf1 |Sc... 25 7.9
>SPCC18.14c |rpp0||60S acidic ribosomal protein Rpp0
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 312
Score = 250 bits (613), Expect = 1e-67
Identities = 119/225 (52%), Positives = 154/225 (68%)
Frame = -2
Query: 679 GKNTMMRKAIKDHLDNNPALEKLLPHIKGNVGFVFTRGDLVEVRDKLLENKVQAPARPGA 500
GKNTM+R+A++ +++ P LE+LLP ++GNVGFVFT DL EVR+ ++ N + APARP A
Sbjct: 54 GKNTMIRRAMRGIINDMPELERLLPVVRGNVGFVFTNADLKEVRETIIANVIAAPARPNA 113
Query: 499 IAPLSVVIPAHNTGLGPEKTSFFQALSIPTKISKGTIEIINDVHILKPGDKVGASEATLL 320
IAPL V +PA NTG+ P KTSFFQAL IPTKI++GTIEI +DVH++ KVG SEATLL
Sbjct: 114 IAPLDVFVPAGNTGMEPGKTSFFQALGIPTKITRGTIEITSDVHLVSKDAKVGPSEATLL 173
Query: 319 NMLNISPFSYGLVVKQVYDSGTIFAPEILDIKPEDLRAKFQAGVANVAALSLAIGYPTIA 140
NMLNISPF+YG+ V +YD G +F+PEILD+ EDL + + + A+SL YPTI
Sbjct: 174 NMLNISPFTYGMDVLTIYDQGNVFSPEILDVSEEDLIGHLLSAASIITAISLGANYPTIL 233
Query: 139 SAPHSIANGFKNLLXXXXXXXXXXXXXXXIKEFIKDPSKFAAVAA 5
S HS+ N +KNL+ K F+ DPS F AA
Sbjct: 234 SVMHSVVNAYKNLVAVSLATEYTFEGTEQTKAFLADPSAFVVAAA 278
>SPBC11G11.03 |||60S acidic ribosomal protein |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 241
Score = 41.5 bits (93), Expect = 1e-04
Identities = 45/154 (29%), Positives = 69/154 (44%), Gaps = 21/154 (13%)
Frame = -2
Query: 679 GKNTMMRKAI-----KDHLDNNPALEKLLPHIKGNVGFVFTRGDLVEVRDKLLENKVQAP 515
GK +M KA+ ++H +N L KLL G VG +FT EV E+ VQ
Sbjct: 68 GKTKVMAKALGHTPEEEHAENVSKLTKLL---HGAVGLLFTNSKPDEVIG-YFESFVQND 123
Query: 514 -ARPGAIAPLSVVIPA----HNTGLGPEKTSFF---------QALSIPTKISKGTIEIIN 377
AR GA+AP + VIPA G P + + L +PT + G + ++
Sbjct: 124 FARAGAVAPFTHVIPAGPVYSRAGQIPVEDDILLTHTLEPQVRQLGMPTVLKNGVVTLLA 183
Query: 376 DVHILKPGDKVGASEATLLNMLNI--SPFSYGLV 281
D + G ++ + + LL + I + F GL+
Sbjct: 184 DFPLCTEGQQLDSRQTRLLKLFGITAAEFKVGLL 217
>SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2100
Score = 29.9 bits (64), Expect = 0.37
Identities = 21/69 (30%), Positives = 34/69 (49%)
Frame = +2
Query: 35 LNELLDGGSFFKLNLCDSSDGQKVLETIGDGMRG*SNSWVSNSQRKSSYISNSSLELGTE 214
L L+ G S+ SSDG + + D ++ + SWV ++R S IS S E+ +
Sbjct: 82 LRRLIQGNSYRIFGTGKSSDGLATYKLLLDELKSLTKSWVM-AKRFSDAISGSDSEVFED 140
Query: 215 ILWFDVQNF 241
FD++ F
Sbjct: 141 ---FDIEAF 146
>SPAC22H12.05c |||fasciclin domain protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 728
Score = 28.3 bits (60), Expect = 1.1
Identities = 14/42 (33%), Positives = 20/42 (47%)
Frame = +3
Query: 381 MISIVPFEILVGIERAWKKEVFSGPRPVLWAGMTTDNGAMAP 506
+IS P + L+GI AW E S R + T+ +AP
Sbjct: 289 IISFTPAKYLIGIGAAWFSEKLSRERKSISVDKTSKRAILAP 330
>SPAC3H1.04c |mdm31||mitochondrial inner membrane protein
Mdm31|Schizosaccharomyces pombe|chr 1|||Manual
Length = 601
Score = 27.5 bits (58), Expect = 2.0
Identities = 13/42 (30%), Positives = 24/42 (57%)
Frame = +3
Query: 543 LSRTSTRSPRVNTKPTLPLMCGNSFSRAGLLSRWSLMALRII 668
L +T +S + PTLP + + S +G+LSR + + ++ I
Sbjct: 35 LKQTVLQSSSFKSFPTLPRLAARNISNSGILSRTTPVIIKQI 76
>SPCC18.03 |||shuttle craft like transcriptional
regulator|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1077
Score = 26.6 bits (56), Expect = 3.4
Identities = 15/62 (24%), Positives = 29/62 (46%)
Frame = +2
Query: 32 VLNELLDGGSFFKLNLCDSSDGQKVLETIGDGMRG*SNSWVSNSQRKSSYISNSSLELGT 211
V L D G + +C+ +D ++++T + +++S KS + N EL T
Sbjct: 1016 VNRRLADAGIASRCEICEINDKNEIVKTRSQRIHSKKKAFLSLVPDKSIGVINRYKELAT 1075
Query: 212 EI 217
E+
Sbjct: 1076 EL 1077
>SPBC660.16 |||phosphogluconate dehydrogenase, decarboxylating
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 492
Score = 26.6 bits (56), Expect = 3.4
Identities = 14/41 (34%), Positives = 24/41 (58%)
Frame = +2
Query: 374 IVDDFNSTL*NLGRDRKSLEERGLLWTKAGVVGGNDD*QWG 496
IVD NS + R + L ++G+L+ +GV GG + ++G
Sbjct: 101 IVDGGNSHYPDTTRRCEELAKKGILFVGSGVSGGEEGARYG 141
>SPAC6B12.04c |||aminotransferase class I and II|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 421
Score = 26.2 bits (55), Expect = 4.5
Identities = 22/65 (33%), Positives = 29/65 (44%), Gaps = 3/65 (4%)
Frame = +3
Query: 447 SGPRPVLWAGMTTDNGAMAPGRAGAWTLFSNSLSRTSTRSPR---VNTKPTLPLMCGNSF 617
+G PV + + G++ P AGAW L N L T + +NT P PL G F
Sbjct: 138 NGGVPVYVPIIPPEEGSVKPVSAGAWKLDMNKLRNAITEKTKMIVINT-PHNPL--GKIF 194
Query: 618 SRAGL 632
S L
Sbjct: 195 SEEEL 199
>SPBC16A3.13 |meu7|aah4|alpha-amylase homolog
Aah4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 774
Score = 25.4 bits (53), Expect = 7.9
Identities = 12/45 (26%), Positives = 19/45 (42%)
Frame = -1
Query: 494 PIVSRHSRPQHRPWSREDLFLPGSFYPYQDFKGYY*NHQRCTHLE 360
P+ ++P H+PW E+ G F G +H+ H E
Sbjct: 183 PVPHNGTKPDHKPWKHEEHCHHGKFPRPVPHNGTKPDHKPWKHEE 227
Score = 25.4 bits (53), Expect = 7.9
Identities = 13/45 (28%), Positives = 19/45 (42%)
Frame = -1
Query: 494 PIVSRHSRPQHRPWSREDLFLPGSFYPYQDFKGYY*NHQRCTHLE 360
PI ++P H+PW E+ G F G +H+ H E
Sbjct: 295 PIPHNGTKPDHKPWKHEEHCHHGRFPRPVPHNGTKPDHKPWKHEE 339
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 25.4 bits (53), Expect = 7.9
Identities = 15/64 (23%), Positives = 28/64 (43%)
Frame = -3
Query: 651 SKTTWTTIQPSRNCCHTSRATLASCSPAETSWRSVTNCWRTKSKLQLVPVPLPHCQSSFP 472
S T T+ + C TS + L + +P ++ + TNC T + + P+ +
Sbjct: 518 SSTPVTSTPVTTTNCTTSTSVLYTSTPVTSTPLATTNC-TTSTSVPYTSTPVTSSNYTIS 576
Query: 471 PTTP 460
+TP
Sbjct: 577 SSTP 580
>SPAC31G5.12c |maf1|n150|repressor of RNA polymerase III Maf1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 215
Score = 25.4 bits (53), Expect = 7.9
Identities = 11/19 (57%), Positives = 14/19 (73%)
Frame = +2
Query: 374 IVDDFNSTL*NLGRDRKSL 430
+VD NSTL N+GR R S+
Sbjct: 98 VVDSVNSTLNNIGRGRLSV 116
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,099,385
Number of Sequences: 5004
Number of extensions: 66972
Number of successful extensions: 202
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 188
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 199
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 325165428
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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