Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc15k19
(701 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_01_0210 - 1647922-1648065,1648459-1648851,1648930-1649028,164... 262 1e-70
12_01_0211 - 1601129-1601272,1601670-1602062,1602142-1602240,160... 261 4e-70
08_01_0215 - 1714224-1714364,1714795-1715187,1715279-1715377,171... 260 8e-70
11_01_0676 - 5511755-5511831,5512857-5513052,5513462-5513577,551... 34 0.13
06_01_0080 + 644021-645463 33 0.29
02_01_0561 + 4120268-4120339,4121462-4121588,4121715-4121770,412... 31 0.67
03_02_0966 + 12783515-12783901 30 2.0
01_01_0703 - 5425713-5425862,5426302-5426451,5426853-5426964,542... 29 2.7
07_01_0115 + 851505-852368,852611-852730,853000-853020,853253-85... 29 3.6
03_03_0258 - 15905847-15905990,15906088-15906244,15906374-159065... 29 3.6
06_03_1442 - 30172595-30172606,30172607-30172684,30173034-301734... 29 4.7
06_03_1439 - 30157110-30157121,30157122-30157199,30157549-301579... 29 4.7
06_03_1427 - 30090464-30090475,30090476-30090553,30090903-300913... 29 4.7
06_03_1422 + 30058936-30058975,30059057-30059233,30060848-300610... 29 4.7
03_05_0968 + 29277122-29277445,29278389-29278505,29278957-292791... 29 4.7
03_04_0243 + 19298293-19299117 28 6.2
03_05_0804 + 27835508-27835805,27836372-27836421,27837306-278379... 28 8.3
>11_01_0210 -
1647922-1648065,1648459-1648851,1648930-1649028,
1649706-1649774,1649877-1650134
Length = 320
Score = 262 bits (643), Expect = 1e-70
Identities = 127/227 (55%), Positives = 165/227 (72%), Gaps = 2/227 (0%)
Frame = -2
Query: 679 GKNTMMRKAIKDHLDN--NPALEKLLPHIKGNVGFVFTRGDLVEVRDKLLENKVQAPARP 506
GKNT++R+ IK H DN N +L+P + GNVG +FT+GDL EVR+++ + KV APAR
Sbjct: 57 GKNTLIRRCIKVHADNTGNKDFLELMPLLVGNVGLIFTKGDLKEVREEVAKYKVGAPARV 116
Query: 505 GAIAPLSVVIPAHNTGLGPEKTSFFQALSIPTKISKGTIEIINDVHILKPGDKVGASEAT 326
G +AP+ VV+P NTGL P +TSFFQ L+IPTKI+KGT+EII V ++K GDKVG+SE+
Sbjct: 117 GLVAPVDVVVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIKKGDKVGSSESA 176
Query: 325 LLNMLNISPFSYGLVVKQVYDSGTIFAPEILDIKPEDLRAKFQAGVANVAALSLAIGYPT 146
LL L I PFSYGLV+ VYDSG++F+PE+LD+ EDL KF +GV+ VA++SLAI YPT
Sbjct: 177 LLAKLGIRPFSYGLVITNVYDSGSVFSPEVLDLTEEDLMEKFASGVSMVASVSLAISYPT 236
Query: 145 IASAPHSIANGFKNLLXXXXXXXXXXXXXXXIKEFIKDPSKFAAVAA 5
IA+APH NG+KN+L IKE++KDPSKFA AA
Sbjct: 237 IAAAPHMFLNGYKNVLAVAVETEYSYPHADKIKEYLKDPSKFAVAAA 283
>12_01_0211 -
1601129-1601272,1601670-1602062,1602142-1602240,
1602920-1602988,1603071-1603328
Length = 320
Score = 261 bits (639), Expect = 4e-70
Identities = 126/226 (55%), Positives = 164/226 (72%), Gaps = 2/226 (0%)
Frame = -2
Query: 679 GKNTMMRKAIKDHLDN--NPALEKLLPHIKGNVGFVFTRGDLVEVRDKLLENKVQAPARP 506
GKNT++R+ IK H DN N +L+P + GNVG +FT+GDL EVR+++ + KV APAR
Sbjct: 57 GKNTLIRRCIKVHADNTGNKDFLELMPLLVGNVGLIFTKGDLKEVREEVAKYKVGAPARV 116
Query: 505 GAIAPLSVVIPAHNTGLGPEKTSFFQALSIPTKISKGTIEIINDVHILKPGDKVGASEAT 326
G +AP+ VV+P NTGL P +TSFFQ L+IPTKI+KGT+EII V ++K GDKVG+SE+
Sbjct: 117 GLVAPVDVVVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIKKGDKVGSSESA 176
Query: 325 LLNMLNISPFSYGLVVKQVYDSGTIFAPEILDIKPEDLRAKFQAGVANVAALSLAIGYPT 146
LL L I PFSYGLV+ VYDSG++F+PE+LD+ EDL KF +GV+ VA++SLAI YPT
Sbjct: 177 LLAKLGIRPFSYGLVITNVYDSGSVFSPEVLDLTEEDLMEKFASGVSMVASVSLAISYPT 236
Query: 145 IASAPHSIANGFKNLLXXXXXXXXXXXXXXXIKEFIKDPSKFAAVA 8
IA+APH NG+KN+L IKE++KDPSKFA A
Sbjct: 237 IAAAPHMFLNGYKNVLAVAVETEYSYPHADKIKEYLKDPSKFAVAA 282
>08_01_0215 -
1714224-1714364,1714795-1715187,1715279-1715377,
1716248-1716316,1716408-1716665
Length = 319
Score = 260 bits (637), Expect = 8e-70
Identities = 125/226 (55%), Positives = 164/226 (72%), Gaps = 2/226 (0%)
Frame = -2
Query: 679 GKNTMMRKAIKDHLDN--NPALEKLLPHIKGNVGFVFTRGDLVEVRDKLLENKVQAPARP 506
GKNT++R+ IK H DN N +L+P + GNVG +FT+GDL EVR+++ + KV APAR
Sbjct: 57 GKNTLIRRCIKVHADNTGNKEFLELMPLLVGNVGLIFTKGDLKEVREEVAKYKVGAPARV 116
Query: 505 GAIAPLSVVIPAHNTGLGPEKTSFFQALSIPTKISKGTIEIINDVHILKPGDKVGASEAT 326
G +AP+ VV+P NTGL P +TSFFQ L+IPTKI+KGT+EII V ++K GDKVG+SE+
Sbjct: 117 GLVAPVDVVVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIKKGDKVGSSESA 176
Query: 325 LLNMLNISPFSYGLVVKQVYDSGTIFAPEILDIKPEDLRAKFQAGVANVAALSLAIGYPT 146
LL L I PFSYGLV+ VYDSG++F+PE+LD+ +DL KF +GV+ VA++SLAI YPT
Sbjct: 177 LLAKLGIRPFSYGLVITNVYDSGSVFSPEVLDLTEDDLMEKFASGVSMVASVSLAISYPT 236
Query: 145 IASAPHSIANGFKNLLXXXXXXXXXXXXXXXIKEFIKDPSKFAAVA 8
IA+APH NG+KN+L IKE++KDPSKFA A
Sbjct: 237 IAAAPHMFLNGYKNVLAVAVETEYSYPHADKIKEYLKDPSKFAVAA 282
>11_01_0676 -
5511755-5511831,5512857-5513052,5513462-5513577,
5513752-5514597,5515515-5515766,5522344-5525206
Length = 1449
Score = 33.9 bits (74), Expect = 0.13
Identities = 28/84 (33%), Positives = 43/84 (51%), Gaps = 9/84 (10%)
Frame = -2
Query: 640 LDNNPALEKL-LPH--IKGNVGFVFTRGDLVEVRDKLLENKVQAPARPGAIAPLSV---- 482
L N AL+KL LPH ++GN+GF+ + + ++ D +L++ A P + LS
Sbjct: 396 LGNIAALQKLVLPHNNLEGNMGFLSSLSECRQLEDLILDHNSFVGALPDHLGNLSARLIS 455
Query: 481 VIPAHN--TGLGPEKTSFFQALSI 416
I HN G PEK S +L +
Sbjct: 456 FIADHNKLAGSLPEKMSNLSSLEL 479
>06_01_0080 + 644021-645463
Length = 480
Score = 32.7 bits (71), Expect = 0.29
Identities = 16/36 (44%), Positives = 21/36 (58%)
Frame = +2
Query: 374 IVDDFNSTL*NLGRDRKSLEERGLLWTKAGVVGGND 481
I+D N N R K++EERGLL+ GV GG +
Sbjct: 100 IIDGGNEWYENTERREKAMEERGLLYLGMGVSGGEE 135
>02_01_0561 +
4120268-4120339,4121462-4121588,4121715-4121770,
4121841-4121912,4122017-4122128,4122247-4122284,
4122412-4122513,4122619-4122675,4122755-4122826,
4122992-4123093,4123210-4123405,4123988-4124094,
4124497-4124691,4124771-4124857,4124905-4124913,
4125599-4125703,4126067-4126164,4126250-4126328,
4126912-4127000,4127086-4127200
Length = 629
Score = 31.5 bits (68), Expect = 0.67
Identities = 23/59 (38%), Positives = 33/59 (55%), Gaps = 6/59 (10%)
Frame = -2
Query: 628 PALEK-LLPHIKGN---VGFVFTRGDLVEV--RDKLLENKVQAPARPGAIAPLSVVIPA 470
PAL+K L H K VG + T GDL + + L+++KV P PGA+ +S + PA
Sbjct: 131 PALDKDALWHFKPEKLGVGDIITGGDLYAIVNENTLMQHKVALP--PGAMGKISYIAPA 187
>03_02_0966 + 12783515-12783901
Length = 128
Score = 29.9 bits (64), Expect = 2.0
Identities = 13/33 (39%), Positives = 21/33 (63%)
Frame = -2
Query: 196 AGVANVAALSLAIGYPTIASAPHSIANGFKNLL 98
AG+A VAA++ A+ P +A A +++ KN L
Sbjct: 67 AGIAAVAAVAAALAVPEVAEAAPALSPSLKNFL 99
>01_01_0703 -
5425713-5425862,5426302-5426451,5426853-5426964,
5427120-5427481,5427578-5427712,5427812-5427889,
5427989-5428174,5428266-5428452,5428552-5428658,
5428732-5428806,5428885-5429040,5429165-5429437,
5429548-5429643,5429724-5429814,5429883-5430385
Length = 886
Score = 29.5 bits (63), Expect = 2.7
Identities = 14/51 (27%), Positives = 31/51 (60%)
Frame = -2
Query: 388 EIINDVHILKPGDKVGASEATLLNMLNISPFSYGLVVKQVYDSGTIFAPEI 236
E++ +++P D VG S +++ +++ P+S VV+ +Y+S + A +I
Sbjct: 346 EMLPSGFLIRPSD-VGGSVIHIVDHMDLEPWSVPEVVRPLYESSAMVAQKI 395
>07_01_0115 +
851505-852368,852611-852730,853000-853020,853253-853369,
853466-853555,853730-853837,853897-853932,853933-854022
Length = 481
Score = 29.1 bits (62), Expect = 3.6
Identities = 16/39 (41%), Positives = 20/39 (51%)
Frame = -2
Query: 223 PEDLRAKFQAGVANVAALSLAIGYPTIASAPHSIANGFK 107
PE RA F AG A V A +P A+A +S GF+
Sbjct: 35 PEKKRASFAAGAAAVRAKVCDARWPASAAAANSAPYGFR 73
>03_03_0258 -
15905847-15905990,15906088-15906244,15906374-15906504,
15906991-15907126,15907193-15907464,15907874-15908169,
15908279-15908646,15908922-15908987,15909064-15909129,
15909226-15909297,15909391-15909459,15909549-15909620,
15909708-15909776,15909874-15909945,15910046-15910178,
15911223-15911361
Length = 753
Score = 29.1 bits (62), Expect = 3.6
Identities = 15/41 (36%), Positives = 22/41 (53%)
Frame = +3
Query: 258 PESYTCLTTRPYENGEMFNMLRRVASEAPTLSPGFKMCTSL 380
PE LT RP +G+ FN LR ++ +PT G + S+
Sbjct: 358 PEKNEPLTLRPIASGK-FNQLRTISIISPTAKEGLQKTVSM 397
>06_03_1442 -
30172595-30172606,30172607-30172684,30173034-30173435,
30173503-30173577,30173667-30173822,30173952-30174143,
30174202-30174208,30175866-30175918
Length = 324
Score = 28.7 bits (61), Expect = 4.7
Identities = 23/92 (25%), Positives = 47/92 (51%), Gaps = 2/92 (2%)
Frame = -2
Query: 388 EIINDVHILKPGDKVGASEATLLNMLNISPFSYGLVVKQVYDSGTIFAPEI--LDIKPED 215
E++ +++P D G S +++ +++ P+S VV+ +Y+S + A +I K +
Sbjct: 109 EMLPSGFLIRPSDG-GGSVIHIVDHMDLEPWSVPEVVRPLYESSALVAQKISMASCKIQS 167
Query: 214 LRAKFQAGVANVAALSLAIGYPTIASAPHSIA 119
LR Q VA S+ G+ +A H+++
Sbjct: 168 LRCLRQ--VAYKDTRSVITGWGRKLAALHALS 197
>06_03_1439 -
30157110-30157121,30157122-30157199,30157549-30157950,
30158018-30158092,30158182-30158337,30158467-30158658,
30158717-30158723,30160381-30160433
Length = 324
Score = 28.7 bits (61), Expect = 4.7
Identities = 23/92 (25%), Positives = 47/92 (51%), Gaps = 2/92 (2%)
Frame = -2
Query: 388 EIINDVHILKPGDKVGASEATLLNMLNISPFSYGLVVKQVYDSGTIFAPEI--LDIKPED 215
E++ +++P D G S +++ +++ P+S VV+ +Y+S + A +I K +
Sbjct: 109 EMLPSGFLIRPSDG-GGSVIHIVDHMDLEPWSVPEVVRPLYESSALVAQKISMASCKIQS 167
Query: 214 LRAKFQAGVANVAALSLAIGYPTIASAPHSIA 119
LR Q VA S+ G+ +A H+++
Sbjct: 168 LRCLRQ--VAYKDTRSVITGWGRKLAALHALS 197
>06_03_1427 -
30090464-30090475,30090476-30090553,30090903-30091304,
30091372-30091446,30091536-30091691,30091821-30092012,
30093735-30093908,30094966-30095123,30096738-30096914,
30096996-30097035
Length = 487
Score = 28.7 bits (61), Expect = 4.7
Identities = 23/92 (25%), Positives = 47/92 (51%), Gaps = 2/92 (2%)
Frame = -2
Query: 388 EIINDVHILKPGDKVGASEATLLNMLNISPFSYGLVVKQVYDSGTIFAPEI--LDIKPED 215
E++ +++P D G S +++ +++ P+S VV+ +Y+S + A +I K +
Sbjct: 272 EMLPSGFLIRPSDG-GGSVIHIVDHMDLEPWSVPEVVRPLYESSALVAQKISMASCKIQS 330
Query: 214 LRAKFQAGVANVAALSLAIGYPTIASAPHSIA 119
LR Q VA S+ G+ +A H+++
Sbjct: 331 LRCLRQ--VAYKDTRSVITGWGRKLAALHALS 360
>06_03_1422 +
30058936-30058975,30059057-30059233,30060848-30061005,
30062063-30062236,30063959-30064150,30064280-30064435,
30064525-30064599,30064667-30065068,30065418-30065495,
30065840-30066173,30066275-30066339
Length = 616
Score = 28.7 bits (61), Expect = 4.7
Identities = 23/92 (25%), Positives = 47/92 (51%), Gaps = 2/92 (2%)
Frame = -2
Query: 388 EIINDVHILKPGDKVGASEATLLNMLNISPFSYGLVVKQVYDSGTIFAPEI--LDIKPED 215
E++ +++P D G S +++ +++ P+S VV+ +Y+S + A +I K +
Sbjct: 272 EMLPSGFLIRPSDG-GGSVIHIVDHMDLEPWSVPEVVRPLYESSALVAQKISMASCKIQS 330
Query: 214 LRAKFQAGVANVAALSLAIGYPTIASAPHSIA 119
LR Q VA S+ G+ +A H+++
Sbjct: 331 LRCLRQ--VAYKDTRSVITGWGRKLAALHALS 360
>03_05_0968 +
29277122-29277445,29278389-29278505,29278957-29279114,
29279678-29279727,29279968-29280161,29280867-29281049,
29281152-29281270,29281383-29281522,29281857-29281937,
29282286-29282389
Length = 489
Score = 28.7 bits (61), Expect = 4.7
Identities = 13/32 (40%), Positives = 17/32 (53%)
Frame = +2
Query: 572 GEHEANVALDVWQQFLEGWIVVQVVFDGFAHH 667
G HEA+ L W+ + GW + F GFA H
Sbjct: 189 GNHEASNYL--WELYYGGWAAPNIYFLGFAGH 218
>03_04_0243 + 19298293-19299117
Length = 274
Score = 28.3 bits (60), Expect = 6.2
Identities = 17/48 (35%), Positives = 26/48 (54%)
Frame = +3
Query: 477 MTTDNGAMAPGRAGAWTLFSNSLSRTSTRSPRVNTKPTLPLMCGNSFS 620
+ TD+ + APG A A + S SRTS +P ++ PT P +S +
Sbjct: 172 VVTDSLSRAPGAAWAAAMAPTSWSRTS--APPASSSPTSPRRARSSLT 217
>03_05_0804 +
27835508-27835805,27836372-27836421,27837306-27837998,
27838077-27838388,27838528-27838698
Length = 507
Score = 27.9 bits (59), Expect = 8.3
Identities = 15/41 (36%), Positives = 21/41 (51%)
Frame = +3
Query: 366 MCTSLMISIVPFEILVGIERAWKKEVFSGPRPVLWAGMTTD 488
+CT L I+ L+G+ +A+ V SGP P G T D
Sbjct: 330 ICTGLGIAPRSIGDLIGVVKAYTTRVGSGPFPTELLGKTGD 370
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,699,833
Number of Sequences: 37544
Number of extensions: 505209
Number of successful extensions: 1517
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1464
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1511
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1803843684
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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