Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc15k19
(701 letters)
Database: fruitfly
53,049 sequences; 24,988,368 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
M25772-1|AAA53372.1| 317|Drosophila melanogaster DNA repair pro... 382 e-106
BT021447-1|AAX33595.1| 317|Drosophila melanogaster GH01513p pro... 382 e-106
AY075528-1|AAL68335.1| 317|Drosophila melanogaster RE74511p pro... 382 e-106
AE014296-3653|AAF51807.1| 317|Drosophila melanogaster CG7490-PA... 382 e-106
AY060753-1|AAL28301.1| 271|Drosophila melanogaster GH20409p pro... 34 0.21
AE014134-406|AAF51257.1| 271|Drosophila melanogaster CG3557-PA ... 34 0.21
X04132-4|CAA27750.1| 1237|Drosophila melanogaster protein ( Dros... 31 1.5
AY928609-2|AAX28841.1| 1000|Drosophila melanogaster RNA-dependen... 31 1.5
AY118783-1|AAM50643.1| 993|Drosophila melanogaster GH13756p pro... 31 1.5
AF145632-1|AAD38607.1| 1225|Drosophila melanogaster BcDNA.GH0603... 31 1.5
AE014134-2033|AAF53072.1| 1225|Drosophila melanogaster CG6230-PA... 31 1.5
BT003263-1|AAO25020.1| 450|Drosophila melanogaster LD22594p pro... 31 2.0
BT001556-1|AAN71311.1| 504|Drosophila melanogaster RE12395p pro... 31 2.0
BT001503-1|AAN71258.1| 504|Drosophila melanogaster LD35207p pro... 31 2.0
AE013599-398|AAF59266.2| 450|Drosophila melanogaster CG11166-PB... 31 2.0
AE013599-397|AAS64903.1| 504|Drosophila melanogaster CG11166-PG... 31 2.0
AE013599-396|AAS64902.1| 504|Drosophila melanogaster CG11166-PF... 31 2.0
AE013599-395|AAM68890.1| 504|Drosophila melanogaster CG11166-PE... 31 2.0
AE013599-394|AAM68889.1| 504|Drosophila melanogaster CG11166-PD... 31 2.0
AE013599-393|AAM68888.1| 504|Drosophila melanogaster CG11166-PC... 31 2.0
AE013599-392|AAF59263.2| 504|Drosophila melanogaster CG11166-PA... 31 2.0
BT001711-1|AAN71466.1| 182|Drosophila melanogaster RE67695p pro... 29 6.1
AE014297-2608|AAF55620.3| 1788|Drosophila melanogaster CG31043-P... 29 6.1
AE014296-1719|AAN11954.1| 182|Drosophila melanogaster CG16707-P... 29 6.1
AE014296-1718|AAN11953.1| 182|Drosophila melanogaster CG16707-P... 29 6.1
AE014296-1717|AAN11952.1| 183|Drosophila melanogaster CG16707-P... 29 6.1
AE014296-1716|AAF50218.1| 183|Drosophila melanogaster CG16707-P... 29 6.1
>M25772-1|AAA53372.1| 317|Drosophila melanogaster DNA repair
protein protein.
Length = 317
Score = 382 bits (939), Expect = e-106
Identities = 186/226 (82%), Positives = 201/226 (88%)
Frame = -2
Query: 679 GKNTMMRKAIKDHLDNNPALEKLLPHIKGNVGFVFTRGDLVEVRDKLLENKVQAPARPGA 500
GKNTMMRKAI+ HL+NNP LEKLLPHIKGNVGFVFT+GDL EVRDKLLE+KV+APARPGA
Sbjct: 56 GKNTMMRKAIRGHLENNPQLEKLLPHIKGNVGFVFTKGDLAEVRDKLLESKVRAPARPGA 115
Query: 499 IAPLSVVIPAHNTGLGPEKTSFFQALSIPTKISKGTIEIINDVHILKPGDKVGASEATLL 320
IAPL V+IPA NTGLGPEKTSFFQALSIPTKISKGTIEIINDV ILKPGDKVGASEATLL
Sbjct: 116 IAPLHVIIPAQNTGLGPEKTSFFQALSIPTKISKGTIEIINDVPILKPGDKVGASEATLL 175
Query: 319 NMLNISPFSYGLVVKQVYDSGTIFAPEILDIKPEDLRAKFQAGVANVAALSLAIGYPTIA 140
NMLNISPFSYGL+V QVYDSG+IF+PEILDIKPEDLRAKFQ GVAN+AA+ L++GYPTIA
Sbjct: 176 NMLNISPFSYGLIVNQVYDSGSIFSPEILDIKPEDLRAKFQQGVANLAAVCLSVGYPTIA 235
Query: 139 SAPHSIANGFKNLLXXXXXXXXXXXXXXXIKEFIKDPSKFAAVAAA 2
SAPHSIANGFKNLL IKE+IKDPSKFAA A+A
Sbjct: 236 SAPHSIANGFKNLLAIAATTEVEFKEATTIKEYIKDPSKFAAAASA 281
>BT021447-1|AAX33595.1| 317|Drosophila melanogaster GH01513p
protein.
Length = 317
Score = 382 bits (939), Expect = e-106
Identities = 186/226 (82%), Positives = 201/226 (88%)
Frame = -2
Query: 679 GKNTMMRKAIKDHLDNNPALEKLLPHIKGNVGFVFTRGDLVEVRDKLLENKVQAPARPGA 500
GKNTMMRKAI+ HL+NNP LEKLLPHIKGNVGFVFT+GDL EVRDKLLE+KV+APARPGA
Sbjct: 56 GKNTMMRKAIRGHLENNPQLEKLLPHIKGNVGFVFTKGDLAEVRDKLLESKVRAPARPGA 115
Query: 499 IAPLSVVIPAHNTGLGPEKTSFFQALSIPTKISKGTIEIINDVHILKPGDKVGASEATLL 320
IAPL V+IPA NTGLGPEKTSFFQALSIPTKISKGTIEIINDV ILKPGDKVGASEATLL
Sbjct: 116 IAPLHVIIPAQNTGLGPEKTSFFQALSIPTKISKGTIEIINDVPILKPGDKVGASEATLL 175
Query: 319 NMLNISPFSYGLVVKQVYDSGTIFAPEILDIKPEDLRAKFQAGVANVAALSLAIGYPTIA 140
NMLNISPFSYGL+V QVYDSG+IF+PEILDIKPEDLRAKFQ GVAN+AA+ L++GYPTIA
Sbjct: 176 NMLNISPFSYGLIVNQVYDSGSIFSPEILDIKPEDLRAKFQQGVANLAAVCLSVGYPTIA 235
Query: 139 SAPHSIANGFKNLLXXXXXXXXXXXXXXXIKEFIKDPSKFAAVAAA 2
SAPHSIANGFKNLL IKE+IKDPSKFAA A+A
Sbjct: 236 SAPHSIANGFKNLLAIAATTEVEFKEATTIKEYIKDPSKFAAAASA 281
>AY075528-1|AAL68335.1| 317|Drosophila melanogaster RE74511p
protein.
Length = 317
Score = 382 bits (939), Expect = e-106
Identities = 186/226 (82%), Positives = 201/226 (88%)
Frame = -2
Query: 679 GKNTMMRKAIKDHLDNNPALEKLLPHIKGNVGFVFTRGDLVEVRDKLLENKVQAPARPGA 500
GKNTMMRKAI+ HL+NNP LEKLLPHIKGNVGFVFT+GDL EVRDKLLE+KV+APARPGA
Sbjct: 56 GKNTMMRKAIRGHLENNPQLEKLLPHIKGNVGFVFTKGDLAEVRDKLLESKVRAPARPGA 115
Query: 499 IAPLSVVIPAHNTGLGPEKTSFFQALSIPTKISKGTIEIINDVHILKPGDKVGASEATLL 320
IAPL V+IPA NTGLGPEKTSFFQALSIPTKISKGTIEIINDV ILKPGDKVGASEATLL
Sbjct: 116 IAPLHVIIPAQNTGLGPEKTSFFQALSIPTKISKGTIEIINDVPILKPGDKVGASEATLL 175
Query: 319 NMLNISPFSYGLVVKQVYDSGTIFAPEILDIKPEDLRAKFQAGVANVAALSLAIGYPTIA 140
NMLNISPFSYGL+V QVYDSG+IF+PEILDIKPEDLRAKFQ GVAN+AA+ L++GYPTIA
Sbjct: 176 NMLNISPFSYGLIVNQVYDSGSIFSPEILDIKPEDLRAKFQQGVANLAAVCLSVGYPTIA 235
Query: 139 SAPHSIANGFKNLLXXXXXXXXXXXXXXXIKEFIKDPSKFAAVAAA 2
SAPHSIANGFKNLL IKE+IKDPSKFAA A+A
Sbjct: 236 SAPHSIANGFKNLLAIAATTEVEFKEATTIKEYIKDPSKFAAAASA 281
>AE014296-3653|AAF51807.1| 317|Drosophila melanogaster CG7490-PA
protein.
Length = 317
Score = 382 bits (939), Expect = e-106
Identities = 186/226 (82%), Positives = 201/226 (88%)
Frame = -2
Query: 679 GKNTMMRKAIKDHLDNNPALEKLLPHIKGNVGFVFTRGDLVEVRDKLLENKVQAPARPGA 500
GKNTMMRKAI+ HL+NNP LEKLLPHIKGNVGFVFT+GDL EVRDKLLE+KV+APARPGA
Sbjct: 56 GKNTMMRKAIRGHLENNPQLEKLLPHIKGNVGFVFTKGDLAEVRDKLLESKVRAPARPGA 115
Query: 499 IAPLSVVIPAHNTGLGPEKTSFFQALSIPTKISKGTIEIINDVHILKPGDKVGASEATLL 320
IAPL V+IPA NTGLGPEKTSFFQALSIPTKISKGTIEIINDV ILKPGDKVGASEATLL
Sbjct: 116 IAPLHVIIPAQNTGLGPEKTSFFQALSIPTKISKGTIEIINDVPILKPGDKVGASEATLL 175
Query: 319 NMLNISPFSYGLVVKQVYDSGTIFAPEILDIKPEDLRAKFQAGVANVAALSLAIGYPTIA 140
NMLNISPFSYGL+V QVYDSG+IF+PEILDIKPEDLRAKFQ GVAN+AA+ L++GYPTIA
Sbjct: 176 NMLNISPFSYGLIVNQVYDSGSIFSPEILDIKPEDLRAKFQQGVANLAAVCLSVGYPTIA 235
Query: 139 SAPHSIANGFKNLLXXXXXXXXXXXXXXXIKEFIKDPSKFAAVAAA 2
SAPHSIANGFKNLL IKE+IKDPSKFAA A+A
Sbjct: 236 SAPHSIANGFKNLLAIAATTEVEFKEATTIKEYIKDPSKFAAAASA 281
>AY060753-1|AAL28301.1| 271|Drosophila melanogaster GH20409p
protein.
Length = 271
Score = 33.9 bits (74), Expect = 0.21
Identities = 19/49 (38%), Positives = 30/49 (61%)
Frame = -3
Query: 663 CAKPSKTTWTTIQPSRNCCHTSRATLASCSPAETSWRSVTNCWRTKSKL 517
C+KPS T +P+R CC + +A L CSP +T ++C++T S+L
Sbjct: 103 CSKPS-TICCYPKPTR-CCASPKAPLVPCSPMDT---PKSSCFKTASRL 146
>AE014134-406|AAF51257.1| 271|Drosophila melanogaster CG3557-PA
protein.
Length = 271
Score = 33.9 bits (74), Expect = 0.21
Identities = 19/49 (38%), Positives = 30/49 (61%)
Frame = -3
Query: 663 CAKPSKTTWTTIQPSRNCCHTSRATLASCSPAETSWRSVTNCWRTKSKL 517
C+KPS T +P+R CC + +A L CSP +T ++C++T S+L
Sbjct: 103 CSKPS-TICCYPKPTR-CCASPKAPLVPCSPMDT---PKSSCFKTASRL 146
>X04132-4|CAA27750.1| 1237|Drosophila melanogaster protein (
Drosophila retrotransposon412 genome. ).
Length = 1237
Score = 31.1 bits (67), Expect = 1.5
Identities = 27/104 (25%), Positives = 49/104 (47%), Gaps = 2/104 (1%)
Frame = -2
Query: 406 ISKGTIEIINDVHILK--PGDKVGASEATLLNMLNISPFSYGLVVKQVYDSGTIFAPEIL 233
+ K T EI ++ ++ + D+V LN +I F +G + YD G ++ IL
Sbjct: 769 LQKQTKEIASEPNVYEVITNDEVRKVVTLQLND-SICLFKHGKKIIARYDVGDLYTNGIL 827
Query: 232 DIKPEDLRAKFQAGVANVAALSLAIGYPTIASAPHSIANGFKNL 101
D+ R + QAG+ +++ + +A P H + FKN+
Sbjct: 828 DLDQFLQRLELQAGIYDISQIKMA---PWKKIFEHVSIDKFKNM 868
>AY928609-2|AAX28841.1| 1000|Drosophila melanogaster RNA-dependent
DNA polymerase protein.
Length = 1000
Score = 31.1 bits (67), Expect = 1.5
Identities = 27/104 (25%), Positives = 49/104 (47%), Gaps = 2/104 (1%)
Frame = -2
Query: 406 ISKGTIEIINDVHILK--PGDKVGASEATLLNMLNISPFSYGLVVKQVYDSGTIFAPEIL 233
+ K T EI ++ ++ + D+V LN +I F +G + YD G ++ IL
Sbjct: 532 LQKQTKEIASEPNVYEVITNDEVRKVVTLQLND-SICLFKHGKKIIARYDVGDLYTNGIL 590
Query: 232 DIKPEDLRAKFQAGVANVAALSLAIGYPTIASAPHSIANGFKNL 101
D+ R + QAG+ +++ + +A P H + FKN+
Sbjct: 591 DLDQFLQRLELQAGIYDISQIKMA---PWKKIFEHVSIDKFKNM 631
>AY118783-1|AAM50643.1| 993|Drosophila melanogaster GH13756p protein.
Length = 993
Score = 31.1 bits (67), Expect = 1.5
Identities = 15/42 (35%), Positives = 24/42 (57%)
Frame = -2
Query: 505 GAIAPLSVVIPAHNTGLGPEKTSFFQALSIPTKISKGTIEII 380
GA A L +++ +TGL PE T FF+ + PT K + ++
Sbjct: 925 GASAALVILL---STGLAPELTEFFEIIDFPTDFRKTLLGVL 963
>AF145632-1|AAD38607.1| 1225|Drosophila melanogaster BcDNA.GH06032
protein.
Length = 1225
Score = 31.1 bits (67), Expect = 1.5
Identities = 15/42 (35%), Positives = 24/42 (57%)
Frame = -2
Query: 505 GAIAPLSVVIPAHNTGLGPEKTSFFQALSIPTKISKGTIEII 380
GA A L +++ +TGL PE T FF+ + PT K + ++
Sbjct: 1157 GASAALVILL---STGLAPELTEFFEIIDFPTDFRKTLLGVL 1195
>AE014134-2033|AAF53072.1| 1225|Drosophila melanogaster CG6230-PA
protein.
Length = 1225
Score = 31.1 bits (67), Expect = 1.5
Identities = 15/42 (35%), Positives = 24/42 (57%)
Frame = -2
Query: 505 GAIAPLSVVIPAHNTGLGPEKTSFFQALSIPTKISKGTIEII 380
GA A L +++ +TGL PE T FF+ + PT K + ++
Sbjct: 1157 GASAALVILL---STGLAPELTEFFEIIDFPTDFRKTLLGVL 1195
>BT003263-1|AAO25020.1| 450|Drosophila melanogaster LD22594p
protein.
Length = 450
Score = 30.7 bits (66), Expect = 2.0
Identities = 18/69 (26%), Positives = 32/69 (46%), Gaps = 2/69 (2%)
Frame = -2
Query: 592 NVGFVFTRGDLVEVRDKLLENKVQAPARPGA--IAPLSVVIPAHNTGLGPEKTSFFQALS 419
N+ TR ++ +L + P GA AP++V +P +G P+ + +S
Sbjct: 59 NIQVKKTRNEVTNKSVQLPGQNMGQPHNQGANGAAPVAVPVPGQGSGTAPKMENSTMRIS 118
Query: 418 IPTKISKGT 392
TK+S G+
Sbjct: 119 TKTKVSTGS 127
>BT001556-1|AAN71311.1| 504|Drosophila melanogaster RE12395p
protein.
Length = 504
Score = 30.7 bits (66), Expect = 2.0
Identities = 18/69 (26%), Positives = 32/69 (46%), Gaps = 2/69 (2%)
Frame = -2
Query: 592 NVGFVFTRGDLVEVRDKLLENKVQAPARPGA--IAPLSVVIPAHNTGLGPEKTSFFQALS 419
N+ TR ++ +L + P GA AP++V +P +G P+ + +S
Sbjct: 113 NIQVKKTRNEVTNKSVQLPGQNMGQPHNQGANGAAPVAVPVPGQGSGTAPKMENSTMRIS 172
Query: 418 IPTKISKGT 392
TK+S G+
Sbjct: 173 TKTKVSTGS 181
>BT001503-1|AAN71258.1| 504|Drosophila melanogaster LD35207p
protein.
Length = 504
Score = 30.7 bits (66), Expect = 2.0
Identities = 18/69 (26%), Positives = 32/69 (46%), Gaps = 2/69 (2%)
Frame = -2
Query: 592 NVGFVFTRGDLVEVRDKLLENKVQAPARPGA--IAPLSVVIPAHNTGLGPEKTSFFQALS 419
N+ TR ++ +L + P GA AP++V +P +G P+ + +S
Sbjct: 113 NIQVKKTRNEVTNKSVQLPGQNMGQPHNQGANGAAPVAVPVPGQGSGTAPKMENSTMRIS 172
Query: 418 IPTKISKGT 392
TK+S G+
Sbjct: 173 TKTKVSTGS 181
>AE013599-398|AAF59266.2| 450|Drosophila melanogaster CG11166-PB,
isoform B protein.
Length = 450
Score = 30.7 bits (66), Expect = 2.0
Identities = 18/69 (26%), Positives = 32/69 (46%), Gaps = 2/69 (2%)
Frame = -2
Query: 592 NVGFVFTRGDLVEVRDKLLENKVQAPARPGA--IAPLSVVIPAHNTGLGPEKTSFFQALS 419
N+ TR ++ +L + P GA AP++V +P +G P+ + +S
Sbjct: 59 NIQVKKTRNEVTNKSVQLPGQNMGQPHNQGANGAAPVAVPVPGQGSGTAPKMENSTMRIS 118
Query: 418 IPTKISKGT 392
TK+S G+
Sbjct: 119 TKTKVSTGS 127
>AE013599-397|AAS64903.1| 504|Drosophila melanogaster CG11166-PG,
isoform G protein.
Length = 504
Score = 30.7 bits (66), Expect = 2.0
Identities = 18/69 (26%), Positives = 32/69 (46%), Gaps = 2/69 (2%)
Frame = -2
Query: 592 NVGFVFTRGDLVEVRDKLLENKVQAPARPGA--IAPLSVVIPAHNTGLGPEKTSFFQALS 419
N+ TR ++ +L + P GA AP++V +P +G P+ + +S
Sbjct: 113 NIQVKKTRNEVTNKSVQLPGQNMGQPHNQGANGAAPVAVPVPGQGSGTAPKMENSTMRIS 172
Query: 418 IPTKISKGT 392
TK+S G+
Sbjct: 173 TKTKVSTGS 181
>AE013599-396|AAS64902.1| 504|Drosophila melanogaster CG11166-PF,
isoform F protein.
Length = 504
Score = 30.7 bits (66), Expect = 2.0
Identities = 18/69 (26%), Positives = 32/69 (46%), Gaps = 2/69 (2%)
Frame = -2
Query: 592 NVGFVFTRGDLVEVRDKLLENKVQAPARPGA--IAPLSVVIPAHNTGLGPEKTSFFQALS 419
N+ TR ++ +L + P GA AP++V +P +G P+ + +S
Sbjct: 113 NIQVKKTRNEVTNKSVQLPGQNMGQPHNQGANGAAPVAVPVPGQGSGTAPKMENSTMRIS 172
Query: 418 IPTKISKGT 392
TK+S G+
Sbjct: 173 TKTKVSTGS 181
>AE013599-395|AAM68890.1| 504|Drosophila melanogaster CG11166-PE,
isoform E protein.
Length = 504
Score = 30.7 bits (66), Expect = 2.0
Identities = 18/69 (26%), Positives = 32/69 (46%), Gaps = 2/69 (2%)
Frame = -2
Query: 592 NVGFVFTRGDLVEVRDKLLENKVQAPARPGA--IAPLSVVIPAHNTGLGPEKTSFFQALS 419
N+ TR ++ +L + P GA AP++V +P +G P+ + +S
Sbjct: 113 NIQVKKTRNEVTNKSVQLPGQNMGQPHNQGANGAAPVAVPVPGQGSGTAPKMENSTMRIS 172
Query: 418 IPTKISKGT 392
TK+S G+
Sbjct: 173 TKTKVSTGS 181
>AE013599-394|AAM68889.1| 504|Drosophila melanogaster CG11166-PD,
isoform D protein.
Length = 504
Score = 30.7 bits (66), Expect = 2.0
Identities = 18/69 (26%), Positives = 32/69 (46%), Gaps = 2/69 (2%)
Frame = -2
Query: 592 NVGFVFTRGDLVEVRDKLLENKVQAPARPGA--IAPLSVVIPAHNTGLGPEKTSFFQALS 419
N+ TR ++ +L + P GA AP++V +P +G P+ + +S
Sbjct: 113 NIQVKKTRNEVTNKSVQLPGQNMGQPHNQGANGAAPVAVPVPGQGSGTAPKMENSTMRIS 172
Query: 418 IPTKISKGT 392
TK+S G+
Sbjct: 173 TKTKVSTGS 181
>AE013599-393|AAM68888.1| 504|Drosophila melanogaster CG11166-PC,
isoform C protein.
Length = 504
Score = 30.7 bits (66), Expect = 2.0
Identities = 18/69 (26%), Positives = 32/69 (46%), Gaps = 2/69 (2%)
Frame = -2
Query: 592 NVGFVFTRGDLVEVRDKLLENKVQAPARPGA--IAPLSVVIPAHNTGLGPEKTSFFQALS 419
N+ TR ++ +L + P GA AP++V +P +G P+ + +S
Sbjct: 113 NIQVKKTRNEVTNKSVQLPGQNMGQPHNQGANGAAPVAVPVPGQGSGTAPKMENSTMRIS 172
Query: 418 IPTKISKGT 392
TK+S G+
Sbjct: 173 TKTKVSTGS 181
>AE013599-392|AAF59263.2| 504|Drosophila melanogaster CG11166-PA,
isoform A protein.
Length = 504
Score = 30.7 bits (66), Expect = 2.0
Identities = 18/69 (26%), Positives = 32/69 (46%), Gaps = 2/69 (2%)
Frame = -2
Query: 592 NVGFVFTRGDLVEVRDKLLENKVQAPARPGA--IAPLSVVIPAHNTGLGPEKTSFFQALS 419
N+ TR ++ +L + P GA AP++V +P +G P+ + +S
Sbjct: 113 NIQVKKTRNEVTNKSVQLPGQNMGQPHNQGANGAAPVAVPVPGQGSGTAPKMENSTMRIS 172
Query: 418 IPTKISKGT 392
TK+S G+
Sbjct: 173 TKTKVSTGS 181
>BT001711-1|AAN71466.1| 182|Drosophila melanogaster RE67695p
protein.
Length = 182
Score = 29.1 bits (62), Expect = 6.1
Identities = 18/60 (30%), Positives = 25/60 (41%)
Frame = -3
Query: 648 KTTWTTIQPSRNCCHTSRATLASCSPAETSWRSVTNCWRTKSKLQLVPVPLPHCQSSFPP 469
KTT +T S T +T +S +PA T+ T T S P PH ++ P
Sbjct: 78 KTTTSTTPASTTSSTTPASTTSSTTPATTTTTPGTTSTTTPSPNSTTTTPPPHTSTTPAP 137
>AE014297-2608|AAF55620.3| 1788|Drosophila melanogaster CG31043-PA,
isoform A protein.
Length = 1788
Score = 29.1 bits (62), Expect = 6.1
Identities = 16/46 (34%), Positives = 24/46 (52%)
Frame = +3
Query: 264 SYTCLTTRPYENGEMFNMLRRVASEAPTLSPGFKMCTSLMISIVPF 401
+Y+C T Y + M + LR + E P++ PG + TSL S F
Sbjct: 824 AYSCDTEGYYTSFHMDSGLRTLKEEEPSVMPGTPLQTSLHTSSYSF 869
>AE014296-1719|AAN11954.1| 182|Drosophila melanogaster CG16707-PB,
isoform B protein.
Length = 182
Score = 29.1 bits (62), Expect = 6.1
Identities = 18/60 (30%), Positives = 25/60 (41%)
Frame = -3
Query: 648 KTTWTTIQPSRNCCHTSRATLASCSPAETSWRSVTNCWRTKSKLQLVPVPLPHCQSSFPP 469
KTT +T S T +T +S +PA T+ T T S P PH ++ P
Sbjct: 78 KTTTSTTPASTTSSTTPASTTSSTTPATTTTTPGTTSTTTPSPNSTTTTPPPHTSTTPAP 137
>AE014296-1718|AAN11953.1| 182|Drosophila melanogaster CG16707-PA,
isoform A protein.
Length = 182
Score = 29.1 bits (62), Expect = 6.1
Identities = 18/60 (30%), Positives = 25/60 (41%)
Frame = -3
Query: 648 KTTWTTIQPSRNCCHTSRATLASCSPAETSWRSVTNCWRTKSKLQLVPVPLPHCQSSFPP 469
KTT +T S T +T +S +PA T+ T T S P PH ++ P
Sbjct: 78 KTTTSTTPASTTSSTTPASTTSSTTPATTTTTPGTTSTTTPSPNSTTTTPPPHTSTTPAP 137
>AE014296-1717|AAN11952.1| 183|Drosophila melanogaster CG16707-PD,
isoform D protein.
Length = 183
Score = 29.1 bits (62), Expect = 6.1
Identities = 18/60 (30%), Positives = 25/60 (41%)
Frame = -3
Query: 648 KTTWTTIQPSRNCCHTSRATLASCSPAETSWRSVTNCWRTKSKLQLVPVPLPHCQSSFPP 469
KTT +T S T +T +S +PA T+ T T S P PH ++ P
Sbjct: 79 KTTTSTTPASTTSSTTPASTTSSTTPATTTTTPGTTSTTTPSPNSTTTTPPPHTSTTPAP 138
>AE014296-1716|AAF50218.1| 183|Drosophila melanogaster CG16707-PC,
isoform C protein.
Length = 183
Score = 29.1 bits (62), Expect = 6.1
Identities = 18/60 (30%), Positives = 25/60 (41%)
Frame = -3
Query: 648 KTTWTTIQPSRNCCHTSRATLASCSPAETSWRSVTNCWRTKSKLQLVPVPLPHCQSSFPP 469
KTT +T S T +T +S +PA T+ T T S P PH ++ P
Sbjct: 79 KTTTSTTPASTTSSTTPASTTSSTTPATTTTTPGTTSTTTPSPNSTTTTPPPHTSTTPAP 138
Database: fruitfly
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 24,988,368
Number of sequences in database: 53,049
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 34,963,180
Number of Sequences: 53049
Number of extensions: 811400
Number of successful extensions: 2653
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 2407
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2649
length of database: 24,988,368
effective HSP length: 83
effective length of database: 20,585,301
effective search space used: 3087795150
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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