Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc15k19
(701 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z79754-9|CAB02098.1| 312|Caenorhabditis elegans Hypothetical pr... 303 6e-83
U41264-4|AAA82424.1| 220|Caenorhabditis elegans Hypothetical pr... 49 4e-06
Z82266-17|CAJ80813.1| 446|Caenorhabditis elegans Hypothetical p... 29 3.2
Z82266-16|CAJ80812.1| 423|Caenorhabditis elegans Hypothetical p... 29 3.2
Z68213-11|CAJ80817.1| 446|Caenorhabditis elegans Hypothetical p... 29 3.2
Z68213-10|CAJ80816.1| 423|Caenorhabditis elegans Hypothetical p... 29 3.2
AC006770-2|AAF60593.1| 1145|Caenorhabditis elegans Hypothetical ... 28 5.6
AC024849-3|AAK68547.1| 327|Caenorhabditis elegans Hypothetical ... 28 7.4
Z82286-2|CAB05306.1| 397|Caenorhabditis elegans Hypothetical pr... 27 9.8
Z81522-2|CAB04238.1| 415|Caenorhabditis elegans Hypothetical pr... 27 9.8
>Z79754-9|CAB02098.1| 312|Caenorhabditis elegans Hypothetical
protein F25H2.10 protein.
Length = 312
Score = 303 bits (745), Expect = 6e-83
Identities = 143/226 (63%), Positives = 176/226 (77%)
Frame = -2
Query: 679 GKNTMMRKAIKDHLDNNPALEKLLPHIKGNVGFVFTRGDLVEVRDKLLENKVQAPARPGA 500
GKNTM+RKA++ HL NP+LEKLLPHI NVGFVFT+ DL E+R KLLEN+ APA+ GA
Sbjct: 56 GKNTMIRKALRGHLGKNPSLEKLLPHIVENVGFVFTKEDLGEIRSKLLENRKGAPAKAGA 115
Query: 499 IAPLSVVIPAHNTGLGPEKTSFFQALSIPTKISKGTIEIINDVHILKPGDKVGASEATLL 320
IAP V +P NTG+GPEKTSFFQAL IPTKI++GTIEI+NDVH++K GDKVGASE+ LL
Sbjct: 116 IAPCDVKLPPQNTGMGPEKTSFFQALQIPTKIARGTIEILNDVHLIKEGDKVGASESALL 175
Query: 319 NMLNISPFSYGLVVKQVYDSGTIFAPEILDIKPEDLRAKFQAGVANVAALSLAIGYPTIA 140
NML ++PFSYGLVV+QVYD GT++ PE+LD+ E+LR +F +GV NVA++SLA+ YPT+A
Sbjct: 176 NMLGVTPFSYGLVVRQVYDDGTLYTPEVLDMTTEELRKRFLSGVRNVASVSLAVNYPTLA 235
Query: 139 SAPHSIANGFKNLLXXXXXXXXXXXXXXXIKEFIKDPSKFAAVAAA 2
S HS+ANG +N+L IK FI DPSKFAA A A
Sbjct: 236 SVAHSLANGLQNMLGVAAVTDVSFKEAETIKAFIADPSKFAAAAPA 281
>U41264-4|AAA82424.1| 220|Caenorhabditis elegans Hypothetical
protein F10E7.5 protein.
Length = 220
Score = 48.8 bits (111), Expect = 4e-06
Identities = 35/139 (25%), Positives = 60/139 (43%), Gaps = 3/139 (2%)
Frame = -2
Query: 682 WGKNTMMRKAIKDHLDNNPA--LEKLLPHIKGNVGFVFTRGDLVEVRDKLLENKVQAPAR 509
+GKN ++ A+ + A L K +KG G +FT EV + E + AR
Sbjct: 68 FGKNNVISIALGKQKSDEYANQLHKASAILKGQCGLMFTNMSKKEVEAEFSEASEEDYAR 127
Query: 508 PGAIAPLSVVIP-AHNTGLGPEKTSFFQALSIPTKISKGTIEIINDVHILKPGDKVGASE 332
G +A +VV+P + + L +PTK+ KG I + + K G+ + +
Sbjct: 128 VGDVATETVVLPEGPISQFAFSMEPQLRKLGLPTKLDKGVITLYQQFEVCKEGEPLTVEQ 187
Query: 331 ATLLNMLNISPFSYGLVVK 275
A +L + + L+ K
Sbjct: 188 AKILKHFEVKMSQFRLIFK 206
>Z82266-17|CAJ80813.1| 446|Caenorhabditis elegans Hypothetical
protein C01F6.6d protein.
Length = 446
Score = 29.1 bits (62), Expect = 3.2
Identities = 16/46 (34%), Positives = 22/46 (47%)
Frame = -3
Query: 630 IQPSRNCCHTSRATLASCSPAETSWRSVTNCWRTKSKLQLVPVPLP 493
+ P RN CH S SP +SW + T+ ++K VP P P
Sbjct: 116 VSPMRNSCHPSNN-----SPPPSSWYAPTSYSQSKETPVFVPPPPP 156
>Z82266-16|CAJ80812.1| 423|Caenorhabditis elegans Hypothetical
protein C01F6.6c protein.
Length = 423
Score = 29.1 bits (62), Expect = 3.2
Identities = 16/46 (34%), Positives = 22/46 (47%)
Frame = -3
Query: 630 IQPSRNCCHTSRATLASCSPAETSWRSVTNCWRTKSKLQLVPVPLP 493
+ P RN CH S SP +SW + T+ ++K VP P P
Sbjct: 116 VSPMRNSCHPSNN-----SPPPSSWYAPTSYSQSKETPVFVPPPPP 156
>Z68213-11|CAJ80817.1| 446|Caenorhabditis elegans Hypothetical
protein C01F6.6d protein.
Length = 446
Score = 29.1 bits (62), Expect = 3.2
Identities = 16/46 (34%), Positives = 22/46 (47%)
Frame = -3
Query: 630 IQPSRNCCHTSRATLASCSPAETSWRSVTNCWRTKSKLQLVPVPLP 493
+ P RN CH S SP +SW + T+ ++K VP P P
Sbjct: 116 VSPMRNSCHPSNN-----SPPPSSWYAPTSYSQSKETPVFVPPPPP 156
>Z68213-10|CAJ80816.1| 423|Caenorhabditis elegans Hypothetical
protein C01F6.6c protein.
Length = 423
Score = 29.1 bits (62), Expect = 3.2
Identities = 16/46 (34%), Positives = 22/46 (47%)
Frame = -3
Query: 630 IQPSRNCCHTSRATLASCSPAETSWRSVTNCWRTKSKLQLVPVPLP 493
+ P RN CH S SP +SW + T+ ++K VP P P
Sbjct: 116 VSPMRNSCHPSNN-----SPPPSSWYAPTSYSQSKETPVFVPPPPP 156
>AC006770-2|AAF60593.1| 1145|Caenorhabditis elegans Hypothetical
protein Y46B2A.3 protein.
Length = 1145
Score = 28.3 bits (60), Expect = 5.6
Identities = 14/37 (37%), Positives = 19/37 (51%)
Frame = +3
Query: 480 TTDNGAMAPGRAGAWTLFSNSLSRTSTRSPRVNTKPT 590
TT P AG WT+ +N ++R TR P +PT
Sbjct: 192 TTRGFTQRPTAAG-WTIRANGITRGQTRVPGTTREPT 227
>AC024849-3|AAK68547.1| 327|Caenorhabditis elegans Hypothetical
protein Y67D8B.2 protein.
Length = 327
Score = 27.9 bits (59), Expect = 7.4
Identities = 17/50 (34%), Positives = 24/50 (48%)
Frame = -2
Query: 541 LLENKVQAPARPGAIAPLSVVIPAHNTGLGPEKTSFFQALSIPTKISKGT 392
+L +Q A A+ L+ +P TGL P + FQAL P I+ T
Sbjct: 42 VLNRYMQLEAYCDAVDDLTGALP--KTGLAPNEPDLFQALFFPRSIAPRT 89
>Z82286-2|CAB05306.1| 397|Caenorhabditis elegans Hypothetical
protein W02A2.3 protein.
Length = 397
Score = 27.5 bits (58), Expect = 9.8
Identities = 16/61 (26%), Positives = 25/61 (40%), Gaps = 1/61 (1%)
Frame = -3
Query: 651 SKTTWTTIQPSRNCCHTSRATLASCSPAET-SWRSVTNCWRTKSKLQLVPVPLPHCQSSF 475
S+T + QP+ N R C+P +S W T S+ +P P P+ +
Sbjct: 286 SRTHYLQCQPAPNNLFCGRWQRMPCAPGTVFDVQSQVCVWDTNSQPGTLPTPAPYVSTQA 345
Query: 474 P 472
P
Sbjct: 346 P 346
>Z81522-2|CAB04238.1| 415|Caenorhabditis elegans Hypothetical
protein F32B4.1 protein.
Length = 415
Score = 27.5 bits (58), Expect = 9.8
Identities = 16/50 (32%), Positives = 24/50 (48%)
Frame = +2
Query: 530 VLQQFVTDLHEVSAGEHEANVALDVWQQFLEGWIVVQVVFDGFAHHSVFS 679
+L DL E S HE+ LDVW++ L Q + G++ H + S
Sbjct: 239 LLSSSARDLRE-SREPHESGWNLDVWKRNLNECRKGQYLLHGYSGHGILS 287
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,408,165
Number of Sequences: 27780
Number of extensions: 395105
Number of successful extensions: 1240
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1175
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1239
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1624019012
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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